Evidence map›Paper›PMID 40876456›Full record

ArticleCell2025

Proximity-specific ribosome profiling reveals the logic of localized mitochondrial translation.

Jingchuan Luo, Stuti Khandwala, Jingjie Hu, Song-Yi Lee, Kelsey L Hickey, Zebulon G Levine, J Wade Harper, Alice Y Ting, Jonathan S Weissman

Abstract read
In one paragraph

Article in Cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Subcellularly Resolved 3D Translatome in Mouse Oocytes and Early Embryos.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Review
  9. Redox signals and oxidative stress in the control of mitochondrial protein import.Protein science : a publication of the Protein Society · 2026
    Review
  10. Article
  11. Article
  12. Dynamic disorder is crucial for mitochondrial protein import.Protein science : a publication of the Protein Society · 2026
    Review
  13. Article
  14. Article
  15. Article
  16. Quality control of protein import into mammalian mitochondria.Protein science : a publication of the Protein Society · 2026
    Review
  17. Article
  18. Article
  19. Functions of J-domain proteins in mitochondrial protein biogenesis.Protein science : a publication of the Protein Society · 2026
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jingchuan LuoWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Stuti KhandwalaWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Jingjie HuWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
Song-Yi LeeDepartment of Genetics, Stanford University, Stanford, CA, USA.
Kelsey L HickeyDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Zebulon G LevineWhitehead Institute for Biomedical Research, Cambridge, MA, USA.
J Wade HarperDepartment of Cell Biology, Blavatnik Institute, Harvard Medical School, Boston, MA 02115, USA.
Alice Y TingDepartment of Genetics, Biology, and Chemistry, Stanford University School of Medicine, Stanford, CA 94305, USA; Chan Zuckerberg Biohub - San Francisco, San Francisco, CA 94158, USA.
Jonathan S WeissmanWhitehead Institute for Biomedical Research, Cambridge, MA, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA; David H. Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02142, USA; Howard Hughes Medical Institute, Massachusetts Institute of Technology, Cambridge, MA, USA. Electronic address: weissman@wi.mit.edu.

Funding

RIGERR: Resources for Investigating Genetic and Epigenetic Regulation of Renal DiseaseRC2DK129964 · NIDDK · UNIVERSITY OF ARIZONA · PI MINGYU LIANG · 2022 to 2026
$4.9M
Regulation of PINK1 and PARKIN-Dependent MitophagyR01NS083524 · NINDS · HARVARD MEDICAL SCHOOL · PI HARPER, JEFFREY W · 2020 to 2024
$2.2M
Howard Hughes Medical InstituteNIDDK NIH HHS RC2 DK129964NINDS NIH HHS R01 NS083524
6 · The paper itself

Abstract

Localized translation broadly enables spatiotemporal control of gene expression. Here, we present LOV-domain-controlled ligase for translation localization (LOCL-TL), an optogenetic approach for monitoring translation with codon resolution at any defined subcellular location under physiological conditions. Application of LOCL-TL to mitochondrially localized translation revealed that ∼20% of human nuclear-encoded mitochondrial genes are translated on the outer mitochondrial membrane (OMM). Mitochondrially translated messages form two classes distinguished by encoded protein length, recruitment mechanism, and cellular function. An evolutionarily ancient mechanism allows nascent chains to drive cotranslational recruitment of long proteins via an unanticipated bipartite targeting signal. Conversely, mRNAs of short proteins, especially eukaryotic-origin electron transport chain (ETC) components, are specifically recruited by the OMM protein A-kinase anchoring protein 1 (AKAP1) in a translation-independent manner that depends on mRNA splicing. AKAP1 loss lowers ETC levels. LOCL-TL thus reveals a hierarchical strategy that enables preferential translation of a subset of proteins on the OMM.

Indexed as

MitochondriaProtein BiosynthesisRibosomesA Kinase Anchor ProteinsHEK293 CellsHeLa CellsHumansMitochondrial MembranesMitochondrial ProteinsOptogeneticsRibosome ProfilingRNA, MessengerRNA SplicingA Kinase Anchor ProteinsMitochondrial ProteinsRNA, MessengerAKAP1cis-element analysiscotranslational targetinglocalized translationmitochondrial bipartite targeting signalouter mitochondrial membraneoxidative phosphorylationOXPHOStranslation-independent mRNA targeting

Identifiers

PMID40876456
PMCPMC12650760

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.