Evidence map›Paper›PMID 40874833›Full record

ArticleJMIR medical informatics2025

Development of a Large-Scale Dataset of Chest Computed Tomography Reports in Japanese and a High-Performance Finding Classification Model: Dataset Development and Validation Study.

Yosuke Yamagishi, Yuta Nakamura, Tomohiro Kikuchi, Yuki Sonoda, Hiroshi Hirakawa, Shintaro Kano, Satoshi Nakamura, Shouhei Hanaoka, Takeharu Yoshikawa, Osamu Abe

Abstract readValidation Study
In one paragraph

Article in JMIR medical informatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yosuke YamagishiDivision of Radiology and Biomedical Engineering, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8655, Japan, 81 3-3815-5411.ORCID 0009-0006-7688-3075
Yuta NakamuraDepartment of Computational Diagnostic Radiology and Preventive Medicine, The University of Tokyo Hospital, Tokyo, Japan.ORCID 0000-0001-6962-6704
Tomohiro KikuchiDepartment of Computational Diagnostic Radiology and Preventive Medicine, The University of Tokyo Hospital, Tokyo, Japan.ORCID 0000-0002-4222-4569
Yuki SonodaDivision of Radiology and Biomedical Engineering, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8655, Japan, 81 3-3815-5411.ORCID 0009-0005-8622-2433
Hiroshi HirakawaDivision of Radiology and Biomedical Engineering, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8655, Japan, 81 3-3815-5411.ORCID 0009-0004-2444-4228
Shintaro KanoDepartment of Diagnostic Radiology, Toranomon Hospital, Tokyo, Japan.ORCID 0000-0003-1432-3815
Satoshi NakamuraDepartment of Diagnostic Radiology, Toranomon Hospital, Tokyo, Japan.ORCID 0009-0004-6463-275X
Shouhei HanaokaDivision of Radiology and Biomedical Engineering, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8655, Japan, 81 3-3815-5411.ORCID 0000-0002-7496-1651
Takeharu YoshikawaDepartment of Computational Diagnostic Radiology and Preventive Medicine, The University of Tokyo Hospital, Tokyo, Japan.ORCID 0000-0002-1924-5468
Osamu AbeDivision of Radiology and Biomedical Engineering, Graduate School of Medicine, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-8655, Japan, 81 3-3815-5411.ORCID 0000-0002-1180-2629

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Recent advances in large language models have highlighted the need for high-quality multilingual medical datasets. Although Japan is a global leader in computed tomography (CT) scanner deployment and use, the absence of large-scale Japanese radiology datasets has hindered the development of specialized language models for medical imaging analysis. Despite the emergence of multilingual models and language-specific adaptations, the development of Japanese-specific medical language models has been constrained by a lack of comprehensive datasets, particularly in radiology. Objective: This study aims to address this critical gap in Japanese medical natural language processing resources, for which a comprehensive Japanese CT report dataset was developed through machine translation, to establish a specialized language model for structured classification. In addition, a rigorously validated evaluation dataset was created through expert radiologist refinement to ensure a reliable assessment of model performance. Methods: We translated the CT-RATE dataset (24,283 CT reports from 21,304 patients) into Japanese using GPT-4o mini. The training dataset consisted of 22,778 machine-translated reports, and the validation dataset included 150 reports carefully revised by radiologists. We developed CT-BERT-JPN, a specialized Bidirectional Encoder Representations from Transformers (BERT) model for Japanese radiology text, based on the "tohoku-nlp/bert-base-japanese-v3" architecture, to extract 18 structured findings from reports. Translation quality was assessed with Bilingual Evaluation Understudy (BLEU) and Recall-Oriented Understudy for Gisting Evaluation (ROUGE) scores and further evaluated by radiologists in a dedicated human-in-the-loop experiment. In that experiment, each of a randomly selected subset of reports was independently reviewed by 2 radiologists-1 senior (postgraduate year [PGY] 6-11) and 1 junior (PGY 4-5)-using a 5-point Likert scale to rate: (1) grammatical correctness, (2) medical terminology accuracy, and (3) overall readability. Inter-rater reliability was measured via quadratic weighted kappa (QWK). Model performance was benchmarked against GPT-4o using accuracy, precision, recall, F1-score, ROC (receiver operating characteristic)-AUC (area under the curve), and average precision. Results: General text structure was preserved (BLEU: 0.731 findings, 0.690 impression; ROUGE: 0.770-0.876 findings, 0.748-0.857 impression), though expert review identified 3 categories of necessary refinements-contextual adjustment of technical terms, completion of incomplete translations, and localization of Japanese medical terminology. The radiologist-revised translations scored significantly higher than raw machine translations across all dimensions, and all improvements were statistically significant (P<.001). CT-BERT-JPN outperformed GPT-4o on 11 of 18 findings (61%), achieving perfect F1-scores for 4 conditions and F1-score >0.95 for 14 conditions, despite varied sample sizes (7-82 cases). Conclusions: Our study established a robust Japanese CT report dataset and demonstrated the effectiveness of a specialized language model in structured classification of findings. This hybrid approach of machine translation and expert validation enabled the creation of large-scale datasets while maintaining high-quality standards. This study provides essential resources for advancing medical artificial intelligence research in Japanese health care settings, using datasets and models publicly available for research to facilitate further advancement in the field.

Indexed as

Datasets as TopicNatural Language ProcessingRadiography, ThoracicTomography, X-Ray ComputedDatabases, FactualEast Asian PeopleHumansJapanReproducibility of Resultscomputed tomographymachine translationmedical language modelsmultilingual datasetsradiology report classificationradiology reportsstructured findings

Identifiers

PMID40874833
PMCPMC12392688

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.