Evidence map›Paper›PMID 40874342›Full record

ArticleThe Plant journal : for cell and molecular biology2025

Restoring cytonuclear harmony: Distinct strategies in Arabidopsis auto- and allopolyploids.

Mehrdad Shahbazi, Jana Kneřová, Denisa Kubíková, Alžběta Doležalová, Marek Szecówka, Yasmim Dutra Santos, Jonathan F Wendel, Joel Sharbrough, David Kopecký

Abstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Mehrdad Shahbazi *Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Jana Kneřová *Centre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Denisa KubíkováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Alžběta DoležalováCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Marek SzecówkaCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Yasmim Dutra SantosCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.
Jonathan F WendelDepartment of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, USA.
Joel SharbroughDepartment of Ecology, Evolution, and Marine Biology, University of California, Santa Barbara, California, USA.ORCID 0000-0002-3642-1662
David KopeckýCentre of Plant Structural and Functional Genomics, Institute of Experimental Botany of the Czech Academy of Sciences, Olomouc, Czech Republic.ORCID 0000-0002-2834-1734

Funding

ERDF Programme Johannes Amos Comenius CZ.02.01.01/00/22_008/0004581Grantová Agentura České Republiky 22-03731S
6 · The paper itself

Abstract

Plants rely on tight coordination between nuclear, mitochondrial, and chloroplast genomes to form essential multi-enzyme cytonuclear complexes. Whole-genome duplication (WGD) doubles the nuclear genome, potentially disrupting cytonuclear stoichiometry unless organellar genomes respond accordingly. Targeted analyses of chloroplasts and mitochondria enabled us to dissect the extent and mechanisms of adjustments in both organelles immediately after WGD and across generations in Arabidopsis auto- and allopolyploids. We observed a substantial overcompensation of organellar genome copies in both organelles in early-generation autotetraploids primarily through multiplication of DNA copies within organelles rather than increasing the number of organelles. Despite higher DNA content, mitochondria maintained their volume, and chloroplasts were even smaller. In successive generations, chloroplast DNA copy numbers continued to rise, whereas mitochondrial DNA copies declined. Gene expression patterns also differed between chloroplasts and mitochondria and between auto- and allopolyploids. In autopolyploids, immediate transcriptional changes were minimal, but by the fourth generation after WGD, nuclear genes involved in mitochondria-nuclear complexes were downregulated. In allopolyploids, transcriptional changes appeared immediately in the first generation (chloroplast genes were upregulated and mitochondrial genes were downregulated). Our findings demonstrate that cytonuclear balance is restored through dynamic, organelle-specific, and polyploid-type-specific mechanisms. These insights advance our understanding of the evolution of polyploid genomes.

Indexed as

ArabidopsisCell NucleusPolyploidyChloroplastsDNA, ChloroplastDNA, MitochondrialGene Expression Regulation, PlantGenome, ChloroplastGenome, PlantMitochondriaDNA, ChloroplastDNA, Mitochondrialchloroplastscytonuclear interactionsgene expressioninterspecific hybridizationmitochondriaorganellar DNAstoichiometrywhole genome duplication

Identifiers

PMID40874342
PMCPMC12392245

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.