Evidence map›Paper›PMID 40873441›Full record

ArticleProceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition2025

MERGE: Multi-faceted Hierarchical Graph-based GNN for Gene Expression Prediction from Whole Slide Histopathology Images.

Aniruddha Ganguly, Debolina Chatterjee, Wentao Huang, Jie Zhang, Alisa Yurovsky, Travis Steele Johnson, Chao Chen

Abstract read
In one paragraph

Article in Proceedings. IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Aniruddha GangulyStony Brook University, NY, USA.
Debolina ChatterjeeIndiana University School of Medicine, IN, USA.
Wentao HuangStony Brook University, NY, USA.
Jie ZhangIndiana University School of Medicine, IN, USA.
Alisa YurovskyStony Brook University, NY, USA.
Travis Steele JohnsonIndiana University School of Medicine, IN, USA.
Chao ChenStony Brook University, NY, USA.

Funding

Apply novel pathogenomic approaches to identify interpretable image QTLs for multiple normal tissuesR01GM153028 · NIGMS · INDIANA UNIVERSITY INDIANAPOLIS · PI HUANG, KUN, ZHANG, JIE · 2024 to 2025
$825k
DMS/NIGMS 1: Topological Study on Histological Images and Spatial TranscriptomicsR01GM148970 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI CHEN, CHAO, JOHNSON, TRAVIS STEELE · 2022 to 2024
$682k
NIGMS NIH HHS R01 GM148970NIGMS NIH HHS R01 GM153028
6 · The paper itself

Abstract

Recent advances in Spatial Transcriptomics (ST) pair histology images with spatially resolved gene expression profiles, enabling predictions of gene expression across different tissue locations based on image patches. This opens up new possibilities for enhancing whole slide image (WSI) prediction tasks with localized gene expression. However, existing methods fail to fully leverage the interactions between different tissue locations, which are crucial for accurate joint prediction. To address this, we introduce

Identifiers

PMID40873441
PMCPMC12380040

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.