Evidence map›Paper›PMID 40873229›Full record

ArticleJournal of chemical information and modeling2025

LEDAW: An Integrated Software Suite with GUI for Automating Local Energy Decomposition Analysis of Molecular Interactions.

Ahmet Altun, Frank Neese, Giovanni Bistoni

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ahmet AltunMax-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany.ORCID 0000-0001-8818-9925
Frank NeeseMax-Planck-Institut für Kohlenforschung, Kaiser-Wilhelm-Platz 1, D-45470 Mülheim an der Ruhr, Germany.ORCID 0000-0003-4691-0547
Giovanni BistoniDepartment of Chemistry, Biology and Biotechnology, University of Perugia, 06123 Perugia, Italy.ORCID 0000-0003-4849-1323

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Accurate interaction energies can be obtained using high-level quantum chemical methods such as DLPNO-CCSD(T) and its HFLD variant in ORCA. The local energy decomposition (LED) scheme helps interpret these energies by breaking them down into chemically meaningful components. However, preparing LED inputs and analyzing results is often complex and error-prone. To streamline this process, we developed LEDAW (local energy decomposition analysis wizard), a Python-based tool that automates LED workflows. It supports standard and fragment-pairwise (fp)-LED, complete basis set (CBS) and Complete PNO Space (CPS) extrapolations, and analysis of N-body and cooperativity effects. With both a GUI and script-based workflow, LEDAW reduces analysis time from hours or days to just minutes, improving usability and reproducibility. It accelerates the generation of interaction energy matrices and heat maps, making advanced analysis of protein-ligand complexes, DNA assemblies, solute-solvent interactions, and molecular crystals more accessible.

Indexed as

SoftwareAutomationLigandsProteinsThermodynamicsLigandsProteins

Identifiers

PMID40873229
PMCPMC12421664

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.