Evidence map›Paper›PMID 40871413›Full record

ArticleMicroorganisms2025

The Role of Coffee Microbiomes in Pathogen Resistance Across Varieties and Ecological Niches.

Yihong Wu, Xiu Zhao, Zuquan Wang, Xuejun Li, Xuesong Zhang, Chun Xie, Huabo Du, Kuaile Jiang, Peng Qu, Chuanli Zhang

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Microorganisms, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Yihong WuCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Xiu ZhaoCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Zuquan WangCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Xuejun LiCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Xuesong ZhangCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Chun XieCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Huabo DuCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Kuaile JiangCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Peng QuCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.
Chuanli ZhangCollege of Tropical Crops, Yunnan Agricultural University, Pu'er 665001, China.

Funding

Ministry of Agriculture and Rural Affairs Central Agricultural Production Development Advan-tageous, Characteristic Industrial Cluster Construction 30000221100000920058the Basic Research Program of Yunnan Science and Technology Department Agricultural joint special project No. 202101BD070001-072Yunnan International Joint Innovation Platform: Yunnan International Joint R&D Center for Green Development of Coffee Industry NO.202303AP140010Yunnan provincal key laboratory of coffee 202449CE340030Yunnan Province Expert Workstation 202305AF150125
6 · The paper itself

Abstract

The plant microbiome plays a role in pathogen defense, but its role in different resistant varieties and ecological niches remains unclear. This study used 16S rRNA and ITS sequencing to investigate microbial communities and interactions in disease-resistant (PT) and susceptible (Bourbon) coffee varieties of five ecological niches: leaves, fruits, roots, rhizosphere soil, and non-rhizosphere soil. We found that the microbial communities differed significantly between the two varieties. The resistant variety was enriched in beneficial bacteria from the Actinobacteriota phylum and a stable, modular microbial network dominated by saprotrophic fungi. In contrast, the susceptible variety had a higher abundance of opportunistic pathogens and stress-indicator fungi, including

Indexed as

coffee plant microbiomeco-occurrence network analysisecological niche specializationmicrobial community structurerust-resistant coffee varieties

Identifiers

PMID40871413
PMCPMC12388573

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.