Evidence map›Paper›PMID 40868203›Full record

ArticleBiomedicines2025

A Hitchhiker Guide to Structural Variant Calling: A Comprehensive Benchmark Through Different Sequencing Technologies.

Giuseppe Giovanni Nardone, Valentina Andrioletti, Aurora Santin, Anna Morgan, Beatrice Spedicati, Maria Pina Concas, Paolo Gasparini, Giorgia Girotto, Ivan Limongelli

Abstract read
In one paragraph

Article in Biomedicines, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Benchmark for simple and complex genome inversions.bioRxiv : the preprint server for biology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Giuseppe Giovanni NardoneDepartment of Medicine, Surgery and Health Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0003-1883-8939
Valentina AndriolettienGenome S.R.L., 27100 Pavia, Italy.
Aurora SantinDepartment of Medicine, Surgery and Health Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0002-8940-5463
Anna MorganInstitute for Maternal and Child Health-I.R.C.C.S. "Burlo Garofolo", 34137 Trieste, Italy.ORCID 0000-0001-6290-445X
Beatrice SpedicatiDepartment of Medicine, Surgery and Health Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0002-7432-4708
Maria Pina ConcasInstitute for Maternal and Child Health-I.R.C.C.S. "Burlo Garofolo", 34137 Trieste, Italy.ORCID 0000-0003-3598-2537
Paolo GaspariniDepartment of Medicine, Surgery and Health Sciences, University of Trieste, 34149 Trieste, Italy.
Giorgia GirottoDepartment of Medicine, Surgery and Health Sciences, University of Trieste, 34149 Trieste, Italy.ORCID 0000-0003-4507-6589
Ivan LimongellienGenome S.R.L., 27100 Pavia, Italy.

Funding

Ministero della Salute RF-2021-12374963
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

benchmarkbest practiceslong readsstructural variantsvariant callingwhole-genome sequencing

Identifiers

PMID40868203
PMCPMC12383524

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.