Evidence map›Paper›PMID 40862133›Full record

ArticleFrontiers in microbiology2025

Comparison of viral phenotype and inflammatory biomarker responses in acute HIV-1 subtype A and C infections.

Samantha McInally, Daniel T Claiborne, Elina El-Badry, Rui Xu, Qianhong Qin, Zachary Ende, Martin J Deymier, Jake W Rhodes, Jill Gilmour, William Kilembe and 4 more

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Samantha McInallyEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Daniel T ClaiborneEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Elina El-BadryEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Rui XuEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Qianhong QinEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Zachary EndeEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Martin J DeymierEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Jake W RhodesEmory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Jill GilmourFaculty of Medicine, Imperial College, London, United Kingdom.
William KilembeCentre for Family Health Research Zambia, Lusaka, Zambia.
Etienne KaritaCentre for Family Health Research, Kigali, Rwanda.
Susan A AllenDepartment of Pathology and Laboratory Medicine, Emory University, Atlanta, GA, United States.
Ling Yue *Emory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.
Eric Hunter *Emory Vaccine Center at Emory National Primate Research Center, Atlanta, GA, United States.

Funding

Deciphering the impact of sex in early subtype C HIV infection and during HARTR01AI172740 · NIAID · EMORY UNIVERSITY · PI Eric Hunter · 2022 to 2026
$4.3M
NIAID NIH HHS R01 AI172740
6 · The paper itself

Abstract

Introduction: HIV-1 subtype A and subtype C infections have different rates of clinical disease progression, with subtype C infected individuals in the IAVI Protocol C multisite acute infection cohort having a 60% faster CD4 loss compared to subtype A. Methods: In order to investigate whether differences were due to the phenotype of the transmitted founder virus (TFV), or inflammatory cytokines and chemokines, known to drive pathogenesis, we PCR amplified, sequenced and constructed infectious molecular HIV-1 clones from the plasma of 30 acutely infected individuals in Rwanda and Zambia. We next compared the inflammatory plasma cytokine/chemokine profiles of individuals pre- and post-the estimated date of infection of 20 Rwandan individuals infected with subtype A and 34 Zambians infected with subtype C HIV-1. Results: A comparison of the replicative capacity of 14 subtype A and 16 subtype C TFV showed that they had similar replicative capacity (RC) scores. Nevertheless, high TFV RC scores were linked to more rapid CD4 Discussion: Overall, the data presented here argue against TFV RC as the basis for different pathogenic outcomes in the subtypes A and C. Moreover, levels of inflammatory cytokines that might drive disease progression were similar during acute infection indicating that additional studies are required to understand the mechanism underlying differences in disease progression between the two subtypes. For both subtypes, high levels of ITAC during acute HIV-1 infection are linked to rapid disease progression.

Indexed as

disease progressionHIV-1 transmitted founder virusHIV pathogenesisinfectious molecular clonesinflammatory chemokines/cytokinesreplicative capacitysubtype Asubtype C

Identifiers

PMID40862133
PMCPMC12375660

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.