ArticleiMeta2025
PMAT2: An efficient graphical assembly toolkit for comprehensive organellar genomes.
Article in iMeta, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
What it found
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The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
15 citing papers in PubMed.
- Exploring the Mitochondrial Genomes ofEcology and evolution · 2026Article
- A Compact Multipartite Mitogenome ofInternational journal of molecular sciences · 2026Article
- Assembly and Comparative Analysis of Five Complete Mitochondrial Genomes of theInternational journal of molecular sciences · 2026Article
- Assembly of the complete mitochondrial genome of Ligusticum chuanxiong and its evolutionary implications.BMC genomics · 2026Article
- Assembly and comparative analysis of the mitochondrial genome of Pleione yunnanensis: genome structure and evolutionary insights.BMC plant biology · 2026Article
- Assembly and phylogenetic analysis of the mitochondrial genome of the Cyclocarya paliurus.Functional & integrative genomics · 2026Article
- Characterization of the mitochondrial genome of the aquatic vegetable Eleocharis dulcis (Burm. f.) Trin. ex Hensch.: the first representative of genus Eleocharis with evolutionary insights in Cyperaceae.BMC plant biology · 2026Article
- Mitochondrial genome of the invasive weed Amaranthus palmeri: structural features, RNA editing, and evolutionary insights.BMC plant biology · 2026Article
- Mitogenomes reveal multiple evolutionary units and low genetic diversity of the critically endangered pancake tortoiseiScience · 2026Article
- Comparative organellar genomics ofFrontiers in plant science · 2026Article
- Newly assembled mitochondrial genomes ofFrontiers in plant science · 2026Article
- Complete mitogenome and phylogenetic analysis of the tertiary relict shrubMitochondrial DNA. Part B, Resources · 2026Article
- Article
- Assembly and comparative analysis of the mitochondrial genome ofFrontiers in plant science · 2025Article
- From genome assembly to functional interpretation: an epistemological shift in understanding plant mitochondrial architecture.Frontiers in plant science · 2025Review
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
11 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
We developed PMAT2, an advanced toolkit for lineage-specific de novo assembly of plant, animal, and fungal mitochondrial genomes, as well as plant chloroplast genome. PMAT2 leverages optimized graph-based strategies tailored to organelle genome complexity, enabling complete and accurate assemblies, even with approximately 1 × highly accurate PacBio high-fidelity (HiFi) reads. By assembling 150 organellar genomes across diverse lineages, PMAT2 outperformed existing tools in assembly completeness. The source code for PMAT2 is publicly available at https://github.com/aiPGAB/PMAT2.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.