Evidence map›Paper›PMID 40858906›Full record

ArticleNature genetics2025

Mutational landscape of triple-negative breast cancer in African American women.

Song Yao, Lei Wei, Qiang Hu, Song Liu, Zarko Manojlovic, Peter N Fiorica, Mark Long, Gary R Zirpoli, Qiuyin Cai, Jirong Long and 21 more

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Song Yao *Department of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA. song.yao@roswellpark.org.ORCID http://orcid.org/0000-0001-9442-1313
Lei Wei *Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-1881-8666
Qiang Hu *Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-4090-5539
Song Liu *Department of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Zarko ManojlovicDepartment of Translational Genomics, Keck School of Medicine of USC, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0001-9705-4088
Peter N FioricaDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0002-1001-1518
Mark LongDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0003-1120-8176
Gary R ZirpoliSlone Epidemiology Center, Boston University, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1417-5349
Qiuyin CaiDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0002-9384-5648
Jirong LongDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0002-7433-9766
Jie PingDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.ORCID http://orcid.org/0000-0001-9907-5819
Mollie E BarnardSlone Epidemiology Center, Boston University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4843-4655
Yuxin JinComprehensive Cancer Center, City of Hope, Duarte, CA, USA.ORCID http://orcid.org/0000-0002-6124-9681
Mitsuko MurakamiDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Jianmin WangDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0001-7527-0409
Qianqian ZhuDepartment of Biostatistics and Bioinformatics, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0003-2516-6675
Warren DavisDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Jianhong ChenDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Rochelle P OndracekDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Thaer KhouryDepartment of Pathology, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Shipra GandhiDepartment of Medicine, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Kazuaki TakabeDepartment of Surgical Oncology, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Naomi KoDepartment of Medical Oncology, Boston Medical Center, Boston, MA, USA.ORCID http://orcid.org/0000-0001-9689-9601
Maureen SandersonDepartment of Family and Community Medicine, Meharry Medical College, Nashville, TN, USA.
Chi-Chen HongDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.
Elisa V BanderaSection of Cancer Epidemiology and Health Outcomes, Rutgers Cancer Institute of New Jersey, New Brunswick, NJ, USA.
David W CraigComprehensive Cancer Center, City of Hope, Duarte, CA, USA.
Christine B AmbrosoneDepartment of Cancer Prevention and Control, Roswell Park Comprehensive Cancer Center, Buffalo, NY, USA.ORCID http://orcid.org/0000-0003-1717-9943
Julie R PalmerSlone Epidemiology Center, Boston University, Boston, MA, USA.
Wei ZhengDivision of Epidemiology, Department of Medicine, Vanderbilt Epidemiology Center, Vanderbilt-Ingram Cancer Center, Vanderbilt University Medical Center, Nashville, TN, USA.
John D CarptenComprehensive Cancer Center, City of Hope, Duarte, CA, USA.

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI Ben Ho Park · 1995 to 2026
$172.8M
Two-Spirit Films in Indigenous Cancer HealthP30CA016056 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI CANDACE S JOHNSON · 1985 to 2026
$116.6M
Southern Community Cohort StudyR01CA092447 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLOT, WILLIAM J., ZHENG, WEI · 2001 to 2015
$74.0M
A Follow-up Study for Causes of Cancer in Black WomenU01CA164974 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI Kimberly A. Bertrand, Yvette C Cozier · 2017 to 2026
$24.0M
Southern Community Cohort StudyU01CA202979 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI BLOT, WILLIAM J., SHRUBSOLE, MARTHA J. · 2016 to 2025
$22.0M
A Follow-up Study for Causes of Cancer in Black WomenUM1CA164974 · NCI · BOSTON UNIVERSITY MEDICAL CAMPUS · PI ROSENBERG, LYNN · 2012 to 2017
$13.7M
YAP1 and RB1 cooperate to regulate lung cancer lineage plasticity and therapeutic resistanceU24CA274159 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI DAVID W. GOODRICH, Alan David Hutson · 2022 to 2026
$8.5M
Somatic Mutations and Their Etiological Determinants for Breast Cancer in African American WomenR01CA228156 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI CARPTEN, JOHN D., PALMER, JULIE R · 2019 to 2023
$6.5M
Obesity, related comorbidities, and breast cancer outcomes in African AmericansR01CA185623 · NCI · RBHS -CANCER INSTITUTE OF NEW JERSEY · PI BANDERA, ELISA V, DEMISSIE, KITAW · 2014 to 2018
$6.2M
Roles of STATs and Src kinases in growth control by IL17U54CA091405 · NCI · VANDERBILT UNIVERSITY · PI MOSES, HAROLD L · 2001 to 2010
$5.0M
Race &Risk Factors for Early/Aggressive Breast CancerR01CA100598 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI AMBROSONE, CHRISTINE B. · 2004 to 2008
$4.8M
The Nashville Breast Health StudyR01CA100374 · NCI · VANDERBILT UNIVERSITY · PI ZHENG, WEI · 2004 to 2009
$4.2M
Breast Cancer Research Foundation (BCRF) No award numberNCI NIH HHS P30 CA016056NCI NIH HHS P30 CA068485NCI NIH HHS R01 CA092447NCI NIH HHS R01 CA100374NCI NIH HHS R01 CA100598NCI NIH HHS R01 CA185623NCI NIH HHS R01 CA228156NCI NIH HHS U01 CA164974NCI NIH HHS U01 CA202979NCI NIH HHS U24 CA274159NCI NIH HHS U54 CA091405NCI NIH HHS UM1 CA164974U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA092447U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA100374U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA100598U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA164974U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA185623U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R01CA228156U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) U01CA202979U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) U54CA91405U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) UM1CA164974
6 · The paper itself

Abstract

African American (AA) women have the highest incidence of triple-negative breast cancer (TNBC) among all racial groups, but are underrepresented in cancer genomic studies. In 462 AA women with TNBC, we characterized the tumor mutational landscape by whole-exome sequencing and RNA sequencing. We unveiled a high-resolution mutational portrait of TNBC in AA women reminiscent of that in Asian and non-Hispanic white women, with no evidence of associations of mutational features with African ancestry. We also made some distinctive discoveries, including an almost complete dominance of TP53 mutations, low frequency of PIK3CA mutations and mutational signature-based subtypes with etiologic and prognostic significance. These findings do not support major racial differences in TNBC biology at the level of somatic mutations. Our study contributes considerably to diversifying the knowledge base of breast cancer genomics and provides insights into the disease etiology, disparities and therapeutic vulnerability of TNBC in AA women.

Indexed as

Black or African AmericanMutationTriple Negative Breast NeoplasmsAdultAgedClass I Phosphatidylinositol 3-KinasesExome SequencingFemaleHumansMiddle AgedPrognosisTumor Suppressor Protein p53Class I Phosphatidylinositol 3-KinasesPIK3CA protein, humanTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID40858906
PMCPMC12425817

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.