Evidence map›Paper›PMID 40858539›Full record

ArticleNature communications2025

Genetic architecture of a light-temperature coincidence detector.

Adam Seluzicki, Joanne Chory

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Genomic Insights into Winter Wheat Breeding for Severely Cold Climates.International journal of molecular sciences · 2026
    Article
  3. Plants (Basel, Switzerland) · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Adam SeluzickiHoward Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA, USA. aseluzicki@salk.edu.ORCID http://orcid.org/0000-0002-9877-5474
Joanne ChoryHoward Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, CA, USA.ORCID http://orcid.org/0000-0002-3664-8525

Funding

Mechanisms Controlling Hormone-Mediated Plant Growth in Response to the EnvironmentR35GM122604 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI CHORY, JOANNE · 2017 to 2021
$2.0M
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
Howard Hughes Medical Institute (HHMI) to Joanne ChoryNIGMS NIH HHS R35 GM122604NIH HHS S10 OD026929U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35-GM122604
6 · The paper itself

Abstract

Light and temperature variations are inescapable in nature. These signals provide daily and seasonal information, guiding life history determinations across many taxa. Here we show that signals from the PHOTOTROPIN2 (PHOT2) blue photoreceptor combine with low temperature information to control flowering. Plants lacking PHOT2 flower later than controls when grown in low ambient temperature. This phenotype requires blue light, is blocked by removal of NON-PHOTOTROPIC HYPOCOTYL 3 (NPH3), and is recapitulated by removing the transcription factor CAMTA2. PHOT2 and CAMTA2 show non-additive genetic interactions in phenotype and gene expression. Network-based co-expression analysis indicates system-level control of key growth modules by PHOT2 and CAMTA2. CAMTA2 is required for low temperature up-regulation of EHB1, a known NPH3-interacting protein, providing a potential mechanism of temperature information input to the PHOT-NPH3 blue light signaling system. Together these data describe the genetic architecture of environmental signal integration in this blue light-low temperature coincidence detection module.

Indexed as

ArabidopsisArabidopsis ProteinsLightPhosphoproteinsCold TemperatureFlowersGene Expression Regulation, PlantPhenotypeSignal TransductionTemperatureTranscription FactorsArabidopsis ProteinsNPH3 protein, ArabidopsisPhosphoproteinsPHOT2 protein, ArabidopsisTranscription Factors

Identifiers

PMID40858539
PMCPMC12381198

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.