Evidence map›Paper›PMID 40858362›Full record

ArticleGenome research2025

APOBEC3A drives deaminase mutagenesis in human gastric epithelium.

Yohan An, Ji-Hyun Lee, Joonoh Lim, Jeonghwan Youk, Seongyeol Park, Ji-Hyung Park, Kijong Yi, Taewoo Kim, Chang Hyun Nam, Won Hee Lee and 12 more

Abstract read
In one paragraph

Article in Genome research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Yohan An *Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Ji-Hyun Lee *Center for Genome Engineering, Institute for Basic Science, Yuseong-gu, Daejeon 34126, Republic of Korea.
Joonoh Lim *Graduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Jeonghwan YoukGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Seongyeol ParkGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Ji-Hyung ParkGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Kijong YiGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Taewoo KimGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Chang Hyun NamGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Won Hee LeeGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Soo A OhInocras Inc., San Diego, California 92121, USA.
Yoo Jin BaeDepartment of Internal Medicine, Division of Gastroenterology, Gangnam Severance Hospital, Yonsei University College of Medicine, Gangnam-gu, Seoul 06229, Korea.
Thomas M KlompstraCenter for Genome Engineering, Institute for Basic Science, Yuseong-gu, Daejeon 34126, Republic of Korea.
Haeun LeeGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Jinju HanGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea.
Junehwak LeeKorea Institute of Science and Technology Information, Daejeon 34141, Republic of Korea.
Jung Woo ParkKorea Institute of Science and Technology Information, Daejeon 34141, Republic of Korea.
Jie-Hyun KimDepartment of Internal Medicine, Division of Gastroenterology, Gangnam Severance Hospital, Yonsei University College of Medicine, Gangnam-gu, Seoul 06229, Korea.
Hyunki KimDepartment of Pathology, Yonsei University College of Medicine, Seoul 03722, Republic of Korea.
Hugo SnippertOncode Institute, Center for Molecular Medicine, University Medical Center Utrecht, 3521 AL Utrecht, the Netherlands.
Bon-Kyoung KooCenter for Genome Engineering, Institute for Basic Science, Yuseong-gu, Daejeon 34126, Republic of Korea; ysju@kaist.ac.kr koobk@ibs.re.kr.
Young Seok JuGraduate School of Medical Science and Engineering, Korea Advanced Institute of Science and Technology (KAIST), Daejeon 34051, Republic of Korea; ysju@kaist.ac.kr koobk@ibs.re.kr.ORCID 0000-0002-5514-4189

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cancer genomes frequently carry apolipoprotein B mRNA editing catalytic polypeptide-like (APOBEC)-associated DNA mutations, suggesting APOBEC enzymes as innate mutagens during cancer initiation and evolution. However, the pure mutagenic impacts of the specific enzymes among this family remain unclear in human normal cell lineages. Here, we investigate the comparative mutagenic activities of APOBEC3A and APOBEC3B, through whole-genome sequencing of human normal gastric organoid lines carrying doxycycline-inducible APOBEC expression cassettes. Our findings demonstrate that transcriptional upregulation of APOBEC3A leads to the acquisition of a massive number of genomic mutations in just a few cell cycles. In contrast, despite clear deaminase activity and DNA damage, APOBEC3B upregulation does not generate a significant increase in mutations in the gastric epithelium. APOBEC3B-associated mutagenesis remains minimal even in the context of

Indexed as

Cytidine DeaminaseGastric MucosaMinor Histocompatibility AntigensMutagenesisProteinsDNA DamageHumansMutationAPOBEC3A protein, humanAPOBEC3B protein, humanCytidine DeaminaseMinor Histocompatibility AntigensProteins

Identifiers

PMID40858362
PMCPMC12487822

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.