Evidence map›Paper›PMID 40857646›Full record

ArticleJournal of chemical theory and computation2025

A Density-Based Approach to Decompose Interaction Energies and Generate Descriptors in Periodic Systems.

Grzegorz Niedzielski, James G M Hooper

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Grzegorz NiedzielskiDepartment of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland.ORCID 0000-0002-6082-8200
James G M HooperDepartment of Theoretical Chemistry, Faculty of Chemistry, Jagiellonian University, Gronostajowa 2, 30-387 Kraków, Poland.ORCID 0000-0003-3859-6172

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We discuss the use of a density-based energy decomposition analysis (EDA) scheme, which we call the pawEDA approach, for partitioning interaction energies computed in periodic chemical systems. The method requires the use of the projector augmented wave (PAW) scheme to treat the behavior of the variational electron orbitals near the atomic nuclei, and it functions by generating a "promolecule" whose (smoothed) valence pseudoorbitals reproduce the same valence electron density as the superposition of the underlying fragments. This construction mimics the behavior of some previously published EDA schemes, particularly that of the DEDA method, which was the first scheme to build a promolecule from density-based constraints. The pawEDA scheme effectively creates a two-step transformation from the fragments to the final system, where the electron density generally shifts smoothly through and/or near the fragment boundaries within each step, and its simplicity complements well other more well-established (and more elaborate) EDA schemes, especially when it is used to compare two or more chemically related systems. It also allows for the construction of two-state "Δ-functions" that accompany the steps, which can be built from the likes of the electron density (Δρ), the electrostatic potential ("ΔESP"), and the electron localization function (ΔELF).

Identifiers

PMID40857646
PMCPMC12424162

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.