Evidence map›Paper›PMID 40857313›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Color-neutral and reversible tissue transparency enables longitudinal deep-tissue imaging in live mice.

Carl H C Keck, Elizabeth L Schmidt, Richard H Roth, Brendan M Floyd, Andy P Tsai, Hassler B Garcia, Miao Cui, Xiaoyu Chen, Chonghe Wang, Andrew Park and 22 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
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  3. Review
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  9. Review
  10. Color-neutral and reversible tissue transparency enables longitudinal deep-tissue imaging in live mice.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

32 authors.

Carl H C Keck *Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0000-0003-1944-4165
Elizabeth L Schmidt *Department of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0000-0002-7420-2997
Richard H RothDepartment of Neurosurgery, Stanford University, Stanford, CA 94305.ORCID 0000-0002-6855-999X
Brendan M FloydDepartment of Chemistry, Stanford University, Stanford, CA 94305.
Andy P TsaiWu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305.ORCID 0000-0001-6400-544X
Hassler B GarciaWu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305.
Miao CuiDepartment of Genetics, Stanford University, Stanford, CA 94305.
Xiaoyu ChenSonologi, Palo Alto, CA 94306.ORCID 0000-0002-5764-2958
Chonghe WangSonologi, Palo Alto, CA 94306.
Andrew ParkDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.
Su ZhaoDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.
Pinyu A LiaoDepartment of Chemistry, Stanford University, Stanford, CA 94305.
Kerriann M CaseyDepartment of Comparative Medicine, Stanford University, Stanford, CA 94305.
Wencke ReinekingDepartment of Comparative Medicine, Stanford University, Stanford, CA 94305.
Sa CaiDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.
Ling-Yi ZhangDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0009-0009-4792-8379
Qianru YangDepartment of Neurosurgery, Stanford University, Stanford, CA 94305.ORCID 0000-0003-4245-6631
Lei YuanDepartment of Biology, Stanford University, Stanford, CA 94305.ORCID 0000-0001-7622-0809
Ani BaghdasaryanDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0000-0003-1324-5683
Eduardo R LopezWu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305.ORCID 0009-0001-8543-6342
Lauren CooperDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0000-0003-3494-7609
Han CuiDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0000-0001-6473-9232
Daniel EsquivelDepartment of Chemistry, Stanford University, Stanford, CA 94305.ORCID 0009-0001-2967-1874
Kenneth BrinsonDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.
Xiaoke ChenDepartment of Biology, Stanford University, Stanford, CA 94305.
Tony Wyss-CorayDepartment of Neurology and Neurological Sciences, Stanford University, Stanford, CA 94305.ORCID 0000-0001-5893-0831
Todd P ColemanWu Tsai Neurosciences Institute, Stanford University, Stanford, CA 94305.ORCID 0000-0002-2144-2495
Mark L BrongersmaDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.
Carolyn R BertozziDepartment of Chemistry, Stanford University, Stanford, CA 94305.ORCID 0000-0003-4482-2754
Gordon X WangDepartment of Psychiatry and Behavioral Sciences, Stanford University, Stanford, CA 94305.
Jun B DingDepartment of Neurosurgery, Stanford University, Stanford, CA 94305.ORCID 0000-0003-0690-1312
Guosong HongDepartment of Materials Science and Engineering, Stanford University, Stanford, CA 94305.ORCID 0000-0002-8858-4471

Funding

Investigating the Surface GlycoproteomeR01CA200423 · NCI · STANFORD UNIVERSITY · PI Carolyn Bertozzi · 2015 to 2026
$3.8M
Rapid brain-wide optogenetic screening with a noninvasive, dynamically programmable in vivo light sourceRF1NS126076 · NINDS · STANFORD UNIVERSITY · PI BUTTS-PAULY, KIM, CHEN, XIAOKE · 2022 to 2022
$1.8M
Brain Aging Studies with Single-Neuron Resolution Using Syringe-Injectable ElectronicsR00AG056636 · NIA · STANFORD UNIVERSITY · PI HONG, GUOSONG · 2018 to 2020
$745k
Mesh electronics for understanding space encoding in the amphibian brainR34NS127103 · NINDS · STANFORD UNIVERSITY · PI GIOCOMO, LISA, HONG, GUOSONG · 2022 to 2022
$653k
Role of thalamic modulation in motor learningK99NS130078 · NINDS · STANFORD UNIVERSITY · PI ROTH, RICHARD · 2023 to 2024
$246k
Damon Runyon Cancer Research Foundation (DRCRF) DRG 2518-24DOD | AF | AMC | AFRL | Air Force Office of Scientific Research (AFOSR) FA9550-21-1-0312HHS | NIH | BRAIN Initiative (The BRAIN Initiative) 1R34NS127103-01HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) K99NS130078HHS | NIH | National Institute of Neurological Disorders and Stroke (NINDS) R01NS126076HHS | NIH | National Institute on Aging (NIA) 5R00AG056636-04HHS | NIH | NCI | Center for Cancer Research (CCR) R01CA200423NCI NIH HHS R01 CA200423NIA NIH HHS R00 AG056636NINDS NIH HHS K99 NS130078NINDS NIH HHS R34 NS127103NINDS NIH HHS RF1 NS126076
6 · The paper itself

Abstract

Light scattering in biological tissue presents a significant challenge for deep in vivo imaging. Our previous work demonstrated the ability to achieve optical transparency in live mice using intensely absorbing dye molecules, which created transparency in the red spectrum while blocking shorter-wavelength photons. In this paper, we extend this capability to achieve optical transparency across the entire visible spectrum by employing molecules with strong absorption in the ultraviolet spectrum and sharp absorption edges that rapidly decline upon entering the visible spectrum. This color-neutral and reversible tissue transparency method enables optical transparency for imaging commonly used fluorophores in the green and yellow spectra. Notably, this approach facilitates tissue transparency for structural and functional imaging of the live mouse brain labeled with yellow fluorescent protein and GCaMP through the scalp and skull. We show that this method enables longitudinal imaging of the same brain regions in awake mice over multiple days during development. Histological analyses of the skin and systemic toxicology studies indicate minimal acute or chronic damage to the skin or body using this approach. This color-neutral and reversible tissue transparency technique opens opportunities for noninvasive deep-tissue optical imaging, enabling long-term visualization of cellular structures and dynamic activity with high spatiotemporal resolution and chronic tracking capabilities.

Indexed as

BrainOptical ImagingAnimalsColorFluorescent DyesLuminescent ProteinsMiceSkinFluorescent DyesLuminescent Proteinsdeep tissue imagingKramers–Kronig relationsoptical transparencytwo-photon microscopy

Identifiers

PMID40857313
PMCPMC12415250

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.