Evidence map›Paper›PMID 40855644›Full record

ReviewProteomics2025

Mining Alzheimer's Interactomes, Macromolecular Complexes and Pathways for Drug Discovery.

Kalpana Panneerselvam, Krishna Kumar Tiwari, Luana Licata, Simona Panni, Sylvie Ricard-Blum, Sucharitha Balu, Susie Huget, Juan Jose Medina Reyes, Eliot Ragueneau, Livia Perfetto and 3 more

Abstract readReview
In one paragraph

Review in Proteomics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Kalpana PanneerselvamEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.ORCID 0000-0003-2534-198X
Krishna Kumar TiwariEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.
Luana LicataUniversity of Rome Tor Vergata Macro Area of Mathematical Physical and Natural Sciences, Roma, Lazio, Italy.
Simona PanniUniversity of Calabria Department of Biology Ecology and Earth Sciences, Arcavacata di Rende, Calabria, Italy.
Sylvie Ricard-BlumUniversite Lyon 1 IUT Lyon 1, Villeurbanne, France.ORCID 0000-0001-9263-1851
Sucharitha BaluEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.
Susie HugetEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.
Juan Jose Medina ReyesEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.
Eliot RagueneauEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.ORCID 0000-0002-7876-6503
Livia PerfettoUniversity of Rome La Sapienza Faculty of Mathematical Physical and Natural Sciences, Roma, Italy.
Birgit MeldalPfizer Institute for Pharmaceutical Materials Science, Cambridge, UK.
Sandra OrchardEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.
Henning HermjakobEuropean Bioinformatics Institute (EMBL-EBI), European Molecular Biology Laboratory, Hinxton, Cambridge, UK.

Funding

Reactome: An Open Knowledgebase of Human Pathways.U24HG012198 · NHGRI · ONTARIO INSTITUTE FOR CANCER RESEARCH · PI Marc E Gillespie, LINCOLN D. STEIN · 2022 to 2026
$7.0M
AOU NIH HHS U24 HG012198BBSRC - National Science Foundation/Directorate for Biological SciencesEuropean Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI) core fundingNHGRI NIH HHS U24 HG012198Wellcome TrustWellcome Trust 203149Wellcome Trust 212925/Z/18/ZWellcome Trust 218294Wellcome Trust 3367
6 · The paper itself

Abstract

Alzheimer's disease (AD) is a progressive neurodegenerative disorder that leads to dementia. Many cases are diagnosed annually and there is no currently available cure. Understanding the underlying disease biology of AD through the study of molecular networks, particularly by mapping clinical variants to tissue-specific interactomes and regulatory macromolecular assemblies, offers a promising avenue to elucidate altered disease pathways. In this study, we applied differential interactome analysis using a manually curated AD dataset to identify how disease-associated mutations alter both transient and stable protein interactions. By focussing on variant-specific associations detected in brain-relevant tissues, we mapped disruptions in stable macromolecular assemblies and performed Reactome enrichment analysis to uncover perturbed pathways unique to each variant. Additionally, we explored therapeutic insights through the analysis of amyloid precursor protein (APP) physical interactors, identifying potential intervention points that influence amyloidogenic processing. Complementing protein-level data, we integrated microRNA (miRNA)-mediated regulatory interactions, revealing an additional layer of posttranscriptional control over key AD genes. Together, this multilayered strategy provides a framework for precision therapeutics in AD.

Indexed as

Alzheimer DiseaseDrug DiscoveryAmyloid beta-Protein PrecursorData MiningHumansMicroRNAsMutationProtein Interaction MapsAmyloid beta-Protein PrecursorMicroRNAs

Identifiers

PMID40855644
PMCPMC12645816

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.