Evidence map›Paper›PMID 40855135›Full record

ArticleNature structural & molecular biology2025

Evolutionary analysis reveals the origin of sodium coupling in glutamate transporters.

Krishna D Reddy, Burha Rasool, Farideh Badichi Akher, Nemanja Kutlešić, Swati Pant, Olga Boudker

Abstract read
In one paragraph

Article in Nature structural & molecular biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Structures of the sodium-coupled phosphate importer SLC34A2 reveal a distinct architecture and gating mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  2. Article
  3. Cryo-EM structures reveal the HLife science alliance · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Krishna D ReddyDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA. krishnareddy@usf.edu.ORCID http://orcid.org/0000-0002-0475-8375
Burha RasoolDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.ORCID http://orcid.org/0009-0004-0796-431X
Farideh Badichi AkherDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.
Nemanja KutlešićDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA.ORCID http://orcid.org/0009-0000-4758-9930
Swati PantDepartment of Biochemistry, Weill Cornell Medical College, New York, NY, USA.
Olga BoudkerDepartment of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA. olb2003@med.cornell.edu.ORCID http://orcid.org/0000-0001-6965-0851

Funding

TRD #3: An automated and streamlined pipeline for in-situ molecular microscopyP41GM103310 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI KIEFT, JEFFREY S · 2012 to 2021
$14.7M
Ion coupling, permeation, and regulation in glutamate transportersR37NS134865 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Olga Boudker · 2024 to 2026
$1.7M
Acquisition of Detector for JEOL 3200 FSC Electron MicroscopeS10OD019994 · OD · NEW YORK STRUCTURAL BIOLOGY CENTER · PI CARRAGHER, BRIDGET OLIVIA · 2015 to 2015
$600k
Evolution of ion specificity in glutamate transportersF32NS102325 · NINDS · WEILL MEDICAL COLL OF CORNELL UNIV · PI REDDY, KRISHNA · 2017 to 2019
$177k
Howard Hughes Medical InstituteNIGMS NIH HHS P41 GM103310NIH HHS S10 OD019994NINDS NIH HHS F32 NS102325NINDS NIH HHS R37 NS134865
6 · The paper itself

Abstract

Secondary active membrane transporters harness the energy of ion gradients to concentrate their substrates. Homologous transporters evolved to couple transport to different ions in response to changing environments and needs. The bases of such diversification and, thus, principles of ion coupling are unexplored. Here, using phylogenetics and ancestral protein reconstruction, we investigated sodium-coupled transport in prokaryotic glutamate transporters, a mechanism ubiquitous across life domains and critical to neurotransmitter recycling in humans by excitatory amino acid transporters from the solute carrier 1 family. By inferring ancestral prokaryotic transporter sequences during a change in the ion-coupling mechanism, we found an evolutionary transition from sodium-dependent to independent substrate binding and transport. Structural and functional experiments on ancestral transporters suggest that the transition involved allosteric mutations, rendering sodium binding dispensable without affecting the ion-binding sites. Allosteric tuning of transporters' energy landscapes might be a widespread route of their functional diversification.

Indexed as

Amino Acid Transport System X-AGEvolution, MolecularSodiumAllosteric RegulationBinding SitesHumansModels, MolecularPhylogenyAmino Acid Transport System X-AGSodium

Identifiers

PMID40855135
PMCPMC12668577

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.