Evidence map›Paper›PMID 40854125›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

Shared metabolism between a bacterial and fungal species that reside in the human gut.

Haley Gause, Alexander D Johnson

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Yeasts in the gastrointestinal tract.FEMS yeast research · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Haley GauseTETRAD Graduate Program, Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.ORCID 0000-0001-9738-6808
Alexander D JohnsonTETRAD Graduate Program, Department of Biochemistry and Biophysics, University of California, San Francisco, CA 94158.ORCID 0000-0003-4503-3327

Funding

Regulatory Circuits and Virulence in Candida albicansR01AI049187 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOHNSON, ALEXANDER D · 2001 to 2021
$13.1M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Mechanisms of White-Opaque Switching in Candida albicansR01AI175080 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ALEXANDER D JOHNSON · 2024 to 2026
$2.2M
HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI049187HHS | NIH | National Institute of Allergy and Infectious Diseases (NIAID) RO1AI55O80NIAID NIH HHS R01 AI049187NIAID NIH HHS R01 AI175080NIAID NIH HHS T32 AI060537
6 · The paper itself

Abstract

The fungal species

Indexed as

Candida albicansEnterococcus faecalisGastrointestinal MicrobiomeAnimalsCitrate (si)-SynthaseCitric AcidCoculture TechniquesFormate DehydrogenasesFormatesGerm-Free LifeHumansMiceCitrate (si)-SynthaseCitric AcidFormate DehydrogenasesFormatesformic acidCandida albicansEnterococcus faecalisgut microbiomeRNA-seq

Identifiers

PMID40854125
PMCPMC12415286

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.