Evidence map›Paper›PMID 40851444›Full record

ArticlePlant biotechnology journal2025

Characterisation of Early Biosynthetic Steps of Atractylon via an Integrative Strategy.

Juan Zhu, Qingqing Li, Qingyuan Zhang, Luying Liu, Ruiheng Tang, Lin He, Shaofang He, Shengqiu Feng, Jianying Li, Shaohua Shu and 3 more

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Chromosome-scale genome assembly and genomic prediction of essential oil compounds in Atractylodes lancea for genomics-assisted breeding.DNA research : an international journal for rapid publication of reports on genes and genomes · 2026
    Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Juan ZhuNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Qingqing LiNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Qingyuan ZhangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Luying LiuNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Ruiheng TangNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Lin HeNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Shaofang HeCollege of Plant Science & Technology, Huazhong Agricultural University, Wuhan, China.
Shengqiu FengNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Jianying LiNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Shaohua ShuNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.
Hui XiongSchool of Pharmaceutical Sciences, South-Central Minzu University, Wuhan, China.
Yuanlong LiuNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.ORCID https://orcid.org/0000-0003-2907-9069
Zhinan MeiNational Key Laboratory for Germplasm Innovation & Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan, China.ORCID https://orcid.org/0000-0002-2354-8787

Funding

Hubei Province Fourth Batch of Modern Agricultural Industry Technology System Authentic Medicinal Herb Industry Technology System Project 2023HBSTX4-07Hubei Provincial Major Scientific and Technological Special Projects 2021ACA004Natural Science Foundation of Hubei Province 2024AFB731Science and the Technology Program of Hubei Province JCZRYB202400491Seed Industry High-quality Development Project of Hubei Province HBZY2023B00503
6 · The paper itself

Abstract

Atractylodes lancea, a vital medicinal plant, is renowned for its bioactive sesquiterpenoids, particularly atractylon. Despite its therapeutic importance, the genetic and biosynthetic pathways underlying atractylon production remain insufficiently understood. In this study, we present a comprehensive chromosome-scale genome assembly of A. lancea with a contig N50 of 263 Mb, advancing the existing genomic knowledge with unprecedented detail. Utilising an integrative omics approach, we coupled genome resequencing across 245 diverse plant accessions, metabolomics and transcriptomics comparisons among different A. lancea genetic backgrounds to profile the sesquiterpenoid divergency and construct a biosynthetic map of the sesquiterpenoids. Metabolite-based genome-wide association studies (mGWAS) reveal significant genetic variations related to atractylon diversity, offering terpene synthase (TPS) gene AlTPSa47 may be involved. Our work further identified and characterised key genes within the TPS family. Catalytic characterisation showed that five of them processed FPP into 12 different sesquiterpenoids. Metabolic profiling determined that transgenic roots overexpressing AlTPSa47 not only increased β-elemene and germacrene B, two of its enzymatic products, but also enhanced atractylon, notably confirming AlTPSa47 is essential in the initial steps of atractylon biosynthesis through rigorous transgenic validation. Collectively, our findings provide foundational resources for advancing breeding programs and enhancing the production of therapeutic compounds in A. lancea, marking a significant leap forward in medicinal plant biotechnology.

Indexed as

AtractylodesSesquiterpenesAlkyl and Aryl TransferasesBiosynthetic PathwaysGenome, PlantGenome-Wide Association StudyMetabolomicsPlant ProteinsAlkyl and Aryl TransferasesPlant ProteinsSesquiterpenesterpene synthaseAtractylodes lanceaatractylongenomesmulti‐omicsterpene synthase

Identifiers

PMID40851444
PMCPMC12665079

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.