Evidence map›Paper›PMID 40851020›Full record

ArticleScientific reports2025

Network toxicology reveals glyphosate mechanisms in kidney injury and cancer​​.

Yiling Dong, Jufan Zhu

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Yiling DongGeneral Practice Department, Tongxiang Wutong Street Community Health Service Center, Jiaxing, 314500, Zhejiang, China.
Jufan ZhuInstitute of Organoid Technology, Kunming Medical University, Kunming, 650500, Yunnan, China. zhujufan1009@163.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular mechanisms underlying glyphosate-induced nephrotoxicity and carcinogenicity were investigated through integrated network toxicology, molecular docking, and dynamics simulations. Screening identified 47 potential glyphosate targets; intersection analysis yielded 20 kidney injury and 31 kidney cancer shared targets. Protein-protein interaction networks highlighted matrix metalloproteinases (MMP9, MMP2, MMP8, MMP3) and PLG as topological hubs. Pathway enrichment revealed significant alterations in extracellular matrix reorganization and nitrogen metabolism. Molecular modeling demonstrated stable glyphosate binding within catalytic domains of MMPs (affinities: -5.03 to - 6.29 kcal/mol), with dynamics simulations confirming persistent complex formation over 100 ns. Results indicate MMP-mediated dysregulation of structural homeostasis, alongside metabolic pathway perturbation, as contributory factors in glyphosate-associated renal pathology. The prominence of MMPs across target networks and functional analyses suggests their role as molecular conduits for glyphosate toxicity.

Indexed as

GlycineHerbicidesKidney NeoplasmsGlyphosateHumansKidneyMatrix MetalloproteinasesMolecular Docking SimulationMolecular Dynamics SimulationProtein Interaction MapsGlycineGlyphosateHerbicidesMatrix MetalloproteinasesAgrochemicalKidney cancerKidney injuryMolecular dockingNetwork toxicology

Identifiers

PMID40851020
PMCPMC12375789

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.