Evidence map›Paper›PMID 40850975›Full record

ArticleScientific reports2025

Characterization of intra-tumoral microbiota from transcriptomic sequencing of Asian breast cancer.

Li-Fang Yeo, Audrey Weng Yan Lee, Phoebe Yon Ern Tee, Joyce Seow Fong Chin, Bernard K B Lee, Joanna Lim, Soo-Hwang Teo, Jia-Wern Pan

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Li-Fang YeoCancer Research Malaysia, Subang Jaya, Malaysia.
Audrey Weng Yan LeeCancer Research Malaysia, Subang Jaya, Malaysia.
Phoebe Yon Ern TeeCancer Research Malaysia, Subang Jaya, Malaysia.
Joyce Seow Fong ChinCancer Research Malaysia, Subang Jaya, Malaysia.
Bernard K B LeeDepartment of Mathematical Sciences, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Selangor, Malaysia.
Joanna LimCancer Research Malaysia, Subang Jaya, Malaysia.
Soo-Hwang TeoCancer Research Malaysia, Subang Jaya, Malaysia.
Jia-Wern PanCancer Research Malaysia, Subang Jaya, Malaysia. jiawern.pan@cancerresearch.my.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The human microbiome has garnered significant interest in recent years as an important driver of human health and disease. Likewise, it has been suggested that the intra-tumoral microbiome may be associated with specific features of cancer such as tumour progression and metastasis. However, additional research is needed to validate these findings in diverse populations. In this study, we characterized the intra-tumoral microbiota of 883 Malaysian breast cancer patients using transcriptomic data from bulk tumours and investigated their association with clinical variables and immune scores. We found that the tumour microbiome was not associated with breast cancer molecular subtype, cancer stage, tumour grade, or patient age, but was weakly associated with immune scores. We also found that the tumour microbiome was associated with immune scores in our cohort using random forest models, suggesting the possibility of an interaction between the tumour microbiome and the tumour immune microenvironment in Asian breast cancer.

Indexed as

Breast NeoplasmsMicrobiotaTranscriptomeAdultAgedAsian PeopleFemaleGene Expression ProfilingHumansMalaysiaMiddle AgedTumor Microenvironment

Identifiers

PMID40850975
PMCPMC12375787

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.