Evidence map›Paper›PMID 40849852›Full record

ArticleDiscover oncology2025

SFRP2 and RPRM as methylation based serum biomarkers for the detection of gastric cancer.

Serap Dede, Çağrı Şakalar, Barış Yılmaz, Gamze Çubukcı, Muradiye Acar, Aydın Yavuz, Gizem Aksu, Saygın Altıner, Osman Yüksel, Furkan Ayaz and 1 more

Abstract read
In one paragraph

Article in Discover oncology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Serap Dede *Eryiğit Medical Devices R&D Center, Ankara, Turkey.
Çağrı Şakalar *Eryiğit Medical Devices R&D Center, Ankara, Turkey.
Barış YılmazDepartment of Gastroenterology, School of Medicine, Biruni University, Istanbul, Turkey.
Gamze ÇubukcıEryiğit Medical Devices R&D Center, Ankara, Turkey.
Muradiye AcarDepartment of Medical Genetics, School of Medicine, Istinye University, Istanbul, Turkey.
Aydın YavuzDepartment of General Surgery, School of Medicine, Gazi University, Ankara, Turkey.
Gizem AksuDepartment of General Surgery, School of Medicine, Gazi University, Ankara, Turkey.
Saygın AltınerDepartment of General Surgery, School of Medicine, Gazi University, Ankara, Turkey.
Osman YükselDepartment of General Surgery, School of Medicine, Gazi University, Ankara, Turkey.
Furkan AyazDepartment of Molecular Biology and Genetics, Faculty of Engineering and Natural Sciences, Istinye University, Istanbul, Turkey.
Esra AydemirDepartment of Molecular Biology and Genetics, Faculty of Engineering and Natural Sciences, Istinye University, Istanbul, Turkey. esra.aydemir@istinye.edu.tr.

Funding

Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 3230267Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 324084
6 · The paper itself

Abstract

backgroundGastric cancer (GC) has a high mortality rate due to the diagnosis in advanced stages. Aberrant DNA methylation is the earliest event in carcinogenesis and can be noninvasively detected in cell-free DNA (cfDNA) from gastric cancer patients.

methodsA total of 143 serum samples were analyzed, including 33 GC patients, 30 chronic gastritis (ChG) patients, and 80 healthy individuals. Additionally, tissue samples were collected from 30 GC patients (stages I-IV) and 38 ChG patients. Methylation patterns of ten genes were examined in GC cells, as well as in serum and tissue samples from GC, ChG, and control groups using methylation-specific qPCR. Statistical evaluations were conducted on various parameters including Ct differences, categorical variables, sensitivity, and specificity.

resultsAPC, CDH1, RASSF1A, hMLH1, RUNX3, p16, SFRP2, RNF180, PCDH10, and RPRM were all significantly hypermethylated in the tissues of GC patients compared to those with ChG (P < 0.001). SFRP2, RPRM, APC, PCDH10, and RNF180 genes were analyzed in sera of 3 groups. Among them, SFRP2 methylation was detected in 71.87% of GC, 16.6% of ChG and 8.8% of the control group. The methylation frequencies of RPRM were 66.6% in GC, 13.3% in ChG, and 7.5% in the control group. In a dual-gene panel assay combining SFRP2 and RPRM, the sensitivity and specificity for detecting gastric cancer in serum samples were 57.58% and 96.25%, respectively, when comparing the cancer and control groups. The sensitivity was 78.79%, the specificity was 90.00% and AUC was 0.931 for GC and control groups (P < 0.0001). The sensitivity was 78.79%, the specificity was 83.33% and AUC was 0.879 for the discrimination of GC and ChG (P < 0.0001).

conclusionsMethylation of 10 genes were studied and a prototype early diagnosis tool for GC utilizing SFRP2 and RPRM with high sensitivity and specificity was developed.

Indexed as

Gastric cancerLiquid biopsyMethylation specific qPCRRPRMSFRP2

Identifiers

PMID40849852
PMCPMC12375522

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.