Evidence map›Paper›PMID 40849730›Full record

ArticleThe ISME journal2025

Multi-scale evidence for declining microbial carbon fixation along forest succession gradients.

Shu-Yi-Dan Zhou, Zhiyang Lie, Chaotang Lei, Qi Zhang, Xujun Liu, Guopeng Wu, Roy Neilson, Fu-Yi Huang, Guowei Chu, Ze Meng and 4 more

Abstract read
In one paragraph

Article in The ISME journal, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Shu-Yi-Dan ZhouGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.ORCID 0000-0002-2585-7305
Zhiyang LieGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.
Chaotang LeiGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.
Qi ZhangInstitute for Advanced Study, Shaoxing University, Shaoxing 312000, China.
Xujun LiuGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.
Guopeng WuGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.
Roy NeilsonEcological Sciences, The James Hutton Institute, Dundee DD2 5DA, United Kingdom.
Fu-Yi HuangState Key Laboratory of Regional and Urban Ecology, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.
Guowei ChuGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.
Ze MengGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.
Dong ZhuState Key Laboratory of Regional and Urban Ecology, Ningbo Observation and Research Station, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China.ORCID 0000-0002-0826-6423
David T TissueHawkesbury Institute for the Environment, Western Sydney University, Hawkesbury Campus, Richmond NSW 2753, Australia.
Josep PeñuelasCSIC, Global Ecology Unit CREAF- CSIC-UAB, Bellaterra, Barcelona 08193, Catalonia, Spain.
Juxiu LiuGuangdong Provincial Key Laboratory of Applied Botany, South China Botanical Garden, Chinese Academy of Sciences, 723 Xingke Road, Tianhe District, Guangzhou 510650, China.ORCID 0000-0001-7850-1006

Funding

European Union Next Generation EU/PRTR SGR 2021-1333Key-Area Research and Development Program of Guangdong Province 2022B1111230001National Natural Science Foundation of China 32101342National Natural Science Foundation of China 42207158National Natural Science Foundation of China 42477132Science and Technology Program of Guangdong 2024B1212070012Science and Technology Program of Guangdong 2024B1212080005Spanish Government AEI/10.13039/501100011033Spanish Government B-I00Spanish Government PID2022-140808NB-I00Spanish Government TED2021-132627
6 · The paper itself

Abstract

Although soil carbon accumulates during subtropical forest succession, changes in microbial communities and their carbon fixation capacity remain unclear. Using an integrative approach that combines field experimentation, extensive global metagenomic data, and isotope labelling, we analysed 84 soil microbiomes from a long-term successional site and 755 global metagenomes to investigate microbial community dynamics and their role in carbon fixation. Based on field data, bacteria, fungi, and protists had synchronous succession with vegetation; however, the relative abundance of carbon fixation genes declined significantly in later successional stages. To further investigate this outcome, we analysed global data from planted and mature natural forests and found significantly higher carbon fixation potential in planted forests, predominantly driven by Pseudomonadota and Actinomycota members. Field-based 13C labelling results further confirmed a significant decline in microbial CO₂ fixation rates with forest succession. These findings underscore the ecological importance of microbial carbon fixation in early forest succession, emphasizing its foundational role in initiating soil carbon accumulation and shaping long-term carbon cycling trajectories.

Indexed as

BacteriaCarbon CycleForestsFungiSoil MicrobiologyCarbonCarbon DioxideCarbon IsotopesIsotope LabelingMetagenomicsMicrobiotaSoilCarbonCarbon DioxideCarbon IsotopesSoilcarbon cycleisotope labellingmicrobial networkold-growth forestsplant richness

Identifiers

PMID40849730
PMCPMC12448444

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.