Evidence map›Paper›PMID 40847312›Full record

ArticleJournal of biological engineering2025

Simultaneous online monitoring of viscosity and oxygen transfer rate in shake flask cultures.

René Hanke, Michaela Sieben, Maurice Finger, Kilian Schnoor, Simon Jeßberger, Julia Weyand, Lluìs Coloma de la Fuente, Marcel Mann, Amizon Azizan, Udo Kosfeld and 1 more

Abstract read
In one paragraph

Article in Journal of biological engineering, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

René Hanke *AVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.ORCID http://orcid.org/0000-0002-5886-6611
Michaela Sieben *AVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.ORCID http://orcid.org/0000-0002-4412-7148
Maurice FingerAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.ORCID http://orcid.org/0000-0001-7384-8625
Kilian SchnoorAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.
Simon JeßbergerAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.
Julia WeyandAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.ORCID http://orcid.org/0000-0001-6752-6873
Lluìs Coloma de la FuenteAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.ORCID http://orcid.org/0000-0002-8881-9162
Marcel MannAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.ORCID http://orcid.org/0000-0002-2819-0358
Amizon AzizanFaculty of Chemical Engineering, Universiti Teknologi MARA, Shah Alam, 40450, Selangor, Malaysia.ORCID http://orcid.org/0000-0002-4298-3194
Udo KosfeldAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany.
Jochen BüchsAVT.BioVT - Chair of Biochemical Engineering, Rheinisch-Westfälische Technische Hochschule (RWTH) Aachen University, Aachen, Germany. jochen.buechs@avt.rwth-aachen.de.ORCID http://orcid.org/0000-0002-2012-3476

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Shake flasks are among the most relevant culture vessels for early-stage process development of viscous microbial cultures. While online process monitoring systems are available for temperature, pH, biomass concentration, dissolved oxygen tension and respiration activity, online measuring techniques for viscosity are not yet commercially available. Especially during the production of biopolymers and the cultivation of filamentous fungi or bacteria, quantification of fermentation broth viscosity is essential to ensure adequate mixing as well as gas/liquid mass and heat transfer. In this work, a previously developed quantitative online viscosity measurement technique, termed ViMOS, is refined to monitor the apparent viscosity of up to eight shake flask cultures in parallel. In addition, the necessary preparation to ensure reproducible measurements is elucidated. By cultivating the two exopolysaccharide forming bacterial strains, Paenibacillus polymyxa and Xanthomonas campestris, as well as the filamentous fungus Trichoderma reesei, the ViMOS was successfully validated for viscosity values up to 120 mPa·s. The combination with oxygen transfer rate monitoring via a RAMOS device allowed to detect microbial growth phases, oxygen limitations, biopolymer production and degradation, as well as the morphological development of filamentous cultures. This dual online monitoring has the potential to improve screening conditions and simplify scale-up procedures of small-scale bioprocesses.

Indexed as

BioprocessOptical measurementPaenibacillus polymyxaProcess analytical technology (PAT)Respiratory activity monitoring system (RAMOS)RheologyTrichoderma reeseiViscosity monitoring online system (ViMOS)Xanthomonas campestris

Identifiers

PMID40847312
PMCPMC12374283

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.