Evidence map›Paper›PMID 40847279›Full record

ArticleBMC microbiology2025

Metagenomic insights into host-specific gastroenteritis bacteria in forest rodents of Sarawak, Borneo: implications for one health surveillance of rodent-borne pathogens.

Muhammad Amin Iman Azmi, Julius William-Dee, Muhd Amsyari Morni, Nur Afiqah Aqilah Azhar, Nor Al-Shuhadah Sabarudin, Emy Ritta Jinggong, Syamzuraini Zolkapley, Nur Iylia Maisarah Baharom, Muhammad Danish Haqeem, Victor Lee Sien and 4 more

Abstract read
In one paragraph

Article in BMC microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Muhammad Amin Iman AzmiFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia. muhdaminiman@gmail.com.
Julius William-DeeFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Muhd Amsyari MorniFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Nur Afiqah Aqilah AzharFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Nor Al-Shuhadah SabarudinFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Emy Ritta JinggongFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Syamzuraini ZolkapleyFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Nur Iylia Maisarah BaharomFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Muhammad Danish HaqeemFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Victor Lee SienFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Asfa Hanis Mohamad AzmiFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Madinah AdrusFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Cheng-Siang TanFaculty of Medicine and Health Sciences, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia.
Faisal Ali Anwarali KhanFaculty of Resource Science and Technology, Universiti Malaysia Sarawak, Sarawak, Kota Samarahan, 94300, Malaysia. akfali@unimas.my.

Funding

Postgraduate Research Grant, UNIMAS F07/PGRG/2046/2020Sarawak Research and Development Council GL/F07/SRDC/05/2021; RDCRG02/CAT/2020/_33
6 · The paper itself

Abstract

Rodents are known to act as reservoirs for zoonotic diseases due to their widespread distribution and synanthropic nature. Among these, foodborne pathogens capable of causing gastroenteritis in humans are of particular concern, as rodents can facilitate their transmission through contamination of food sources. Forest-dwelling rodents may harbour bacterial taxa native to their habitat, posing a risk of zoonotic spillover to nearby human settlements. This risk is further heightened by the growing prevalence of ecotourism activities, particularly in tropical countries like Malaysia. In this study, rodent trapping was conducted in selected forested areas adjacent to human settlements across Sarawak. Nanopore sequencing of the full-length 16 S rRNA gene was conducted on faecal DNA from 46 rodent individuals representing seven different species (Maxomys surifer, M. tajuddinii, M. whiteheadi, Niviventer cremoriventer, Rattus tanezumi, R. tiomanicus and Sundamys muelleri). A total of ten bacterial species associated with gastroenteritis were successfully detected. Notable findings in this study include Campylobacter, Salmonella and Shigella species, which are known to cause bacterial gastroenteritis in humans. Also, the presence of certain bacterial taxa in specific rodent genera suggests potential host specificity of foodborne pathogens. This study highlights the potential public health risks caused by rodent-borne bacterial transmission and the importance of monitoring forest rodents as potential reservoirs of zoonotic pathogens.

Indexed as

BacteriaGastroenteritisMetagenomicsRodent DiseasesRodentiaAnimalsBorneoDisease ReservoirsDNA, BacterialFecesForestsHost SpecificityHumansOne HealthPhylogenyRNA, Ribosomal, 16SDNA, BacterialRNA, Ribosomal, 16S16SGut microbiotaMalaysiaMuridaeNanopore sequencing

Identifiers

PMID40847279
PMCPMC12374452

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.