Evidence map›Paper›PMID 40846950›Full record

ArticleMicrobial cell factories2025

Increasing lipid accumulation in Chlamydomonas by serial knocking out of DYRKP1 kinase and ADP-glucose pyrophosphorylase.

Minjae Kim, Ji Yeon Kim, Kyong Ha Han, Hyeon Ho Shin, EonSeon Jin

Abstract read
In one paragraph

Article in Microbial cell factories, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Minjae KimLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje, 53201, Republic of Korea. sciencekor89@kiost.ac.kr.ORCID http://orcid.org/0000-0002-2356-1295
Ji Yeon KimLibrary of Marine Samples, Korea Institute of Ocean Science & Technology, Geoje, 53201, Republic of Korea.ORCID http://orcid.org/0009-0002-3154-3393
Kyong Ha HanDepartment of Environmental Sciences, Hanyang University, Seoul, 222 04763, Republic of Korea.ORCID http://orcid.org/0000-0002-4772-145X
Hyeon Ho ShinDivision of Fisheries Life Science, Pukyong National University, Busan, 48574, Republic of Korea.ORCID http://orcid.org/0000-0002-9711-6717
EonSeon JinDepartment of Life Science, Research Institute for Natural Sciences, Hanyang University, Seoul, 222 04763, Republic of Korea.ORCID http://orcid.org/0000-0001-5691-0124

Funding

National Research Foundation of Korea No. RS-2024-00458958
6 · The paper itself

Abstract

Microalgae are promising sustainable feedstocks for biodiesel production. Among the primary carbon reservoirs in microalgae, starch and lipids are the main targets for metabolic engineering aimed at enhancing productivity. Redirecting carbon flux from starch toward lipid biosynthesis has been considered an effective strategy to improve lipid yield, and manipulating upstream regulators may allow broader control over metabolic networks. DYRKP1, a plant-specific dual-specificity tyrosine-phosphorylation-regulated kinase conserved in photosynthetic eukaryotes, has been implicated in regulating intracellular carbon partitioning. In this study, we investigated the physiological and metabolic effects of DYRKP1 deficiency in a cell-wall-less strain of Chlamydomonas reinhardtii. To further enhance lipid accumulation, we additionally knocked out ADP-glucose pyrophosphorylase (AGP), a key enzyme involved in starch biosynthesis. The total fatty acid content of DYRKP1-AGP double knockout (dKO) mutants was higher than that of their parental strain (CC4349) under both nitrogen-replete and deplete conditions, and was even 1.2-fold higher than that of the AGP single knockout (agp) mutant under nitrogen-deplete conditions. The DYRKP1 single knockout mutants exhibited fatty acid composition similar to the parental strain, regardless of nitrogen depletion. The fatty acid composition of the dKO mutants resembled that of the agp mutant under nitrogen-replete conditions, but diverged upon nitrogen starvation, suggesting a conditional interaction between upstream regulation and metabolic flux. This finding implies that disrupting upstream regulators like DYRKP1 may offer limited additional benefit when key downstream bottlenecks, such as starch biosynthesis, are already removed. Overall, our study underscores the layered complexity of carbon partitioning in C. reinhardtii and the importance of context-dependent metabolic regulation in optimizing lipid production.

Indexed as

Chlamydomonas reinhardtiiGlucose-1-Phosphate AdenylyltransferaseLipid MetabolismFatty AcidsGene Knockout TechniquesMetabolic EngineeringNitrogenStarchFatty AcidsGlucose-1-Phosphate AdenylyltransferaseNitrogenStarch

Identifiers

PMID40846950
PMCPMC12372370

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.