Evidence map›Paper›PMID 40846843›Full record

ArticleNature communications2025

Episodic transport of protein aggregates achieves a positive size selectivity in aggresome formation.

Rui Fang, Luolan Bai, Bert M Verheijen, Boyan Li, Kevin Dong, Joao A Paulo, Mengying Zhou, Yi-Chi Chu, Yuyu Song, Michael Y Sherman and 4 more

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors.

Rui Fang *Department of Systems Biology, Harvard Medical School, Boston, MA, USA. fangrui@westlake.edu.cn.ORCID http://orcid.org/0000-0002-9943-3003
Luolan Bai *Department of Systems Biology, Harvard Medical School, Boston, MA, USA.
Bert M VerheijenDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Boyan LiDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0003-1868-8619
Kevin DongDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.
Joao A PauloDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-4291-413X
Mengying ZhouDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Yi-Chi ChuDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Yuyu SongDepartment of Neurology, Massachusetts General Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0002-9196-1610
Michael Y ShermanDepartment of Molecular Biology, Ariel University, Ariel, Israel.
Steven GygiDepartment of Cell Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-7626-0034
Christine M FieldDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.
Timothy J MitchisonDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0001-7781-1897
Ying LuDepartment of Systems Biology, Harvard Medical School, Boston, MA, USA. ying_lu@hms.harvard.edu.ORCID http://orcid.org/0000-0003-3516-7735

Funding

Cell and Chemical Biology of MicrotubulesR35GM131753 · NIGMS · HARVARD MEDICAL SCHOOL · PI Timothy J Mitchison · 2019 to 2026
$6.4M
Determine the mechanism of recognition of ubiquitin configurations by the 26S proteasomeR01GM134064 · NIGMS · HARVARD MEDICAL SCHOOL · PI LU, YING · 2019 to 2023
$1.9M
NIGMS NIH HHS R01 GM134064NIGMS NIH HHS R35 GM131753U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R01 GM134064-01
6 · The paper itself

Abstract

Eukaryotic cells direct toxic misfolded proteins to various quality control pathways based on their chemical properties and aggregation status. Aggregated proteins are targeted to selective autophagy or specifically sequestered into the "aggresome", a perinuclear inclusion at the microtubule-organizing center (MTOC). However, the mechanism for selective aggresome recruitment remains unclear. To investigate this process, here we reconstitute MTOC-directed aggregate transport in Xenopus laevis egg extract using AgDD, a chemically inducible aggregation system. High-resolution single-particle tracking reveals that dynein-mediated aggregate transport is highly episodic, with average velocity positively correlating with aggregate size. Mechanistic modeling suggests that recurrent formation of the dynein transport complex biases larger aggregates towards active transport, compensating for the slowdown due to viscosity. Both episodic transport and positive size selectivity are conferred by aggresome-specific dynein adapters. Coupling an aggresome adapter to polystyrene beads recapitulates positive size selectivity in transport, while recruiting conventional dynein adapters to protein aggregates perturbs aggresome formation and reverses the size selectivity.

Indexed as

Protein AggregatesAnimalsBiological TransportDyneinsMicrotubulesProtein TransportXenopus laevisDyneinsProtein Aggregates

Identifiers

PMID40846843
PMCPMC12373839

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.