Evidence map›Paper›PMID 40846763›Full record

ArticleNature genetics2025

Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity.

Yota Hagihara, Chao Zhang, Yi Zhang

Abstract read
In one paragraph

Article in Nature genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Yota Hagihara *Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0002-6338-6348
Chao Zhang *Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA, USA.ORCID http://orcid.org/0000-0003-4167-4872
Yi ZhangHoward Hughes Medical Institute, Boston Children's Hospital, Boston, MA, USA. yzhang@genetics.med.harvard.edu.ORCID http://orcid.org/0000-0002-2789-0811

Funding

Understanding mechanism and improving efficiency of somatic cell nuclear transferR01HD092465 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI ZHANG, YI · 2017 to 2021
$2.4M
Understanding the mechanism of pre- to naïve- to formative- pluripotency transitionsR01HD116750 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Yi Zhang · 2025 to 2026
$1.5M
NICHD NIH HHS R01 HD092465NICHD NIH HHS R01 HD116750U.S. Department of Health & Human Services | NIH | Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) R01HD092465
6 · The paper itself

Abstract

Mammalian switch/sucrose nonfermentable (mSWI/SNF) complex regulates chromatin accessibility and frequently shows alterations due to mutation in cancer and neurological diseases. Inadequate expression of mSWI/SNF in heterozygous mice can lead to developmental defects, indicating dosage-sensitive effects of mSWI/SNF. However, how its dosage affects function has remained unclear. Using a targeted protein degradation system, we investigated its dosage-sensitive effects by precisely controlling protein levels of BRG1, the ATPase subunit of the mSWI/SNF complex. We found that binding of BRG1 to chromatin exhibited a linear response to the BRG1 protein level. Although chromatin accessibility at most promoters and insulators was largely unaffected by BRG1 depletion, 44% of enhancers, including 84% of defined superenhancers, showed reduced accessibility. Notably, half of the BRG1-regulated enhancers, particularly superenhancers, exhibited a buffered response to BRG1 loss. Consistently, transcription exhibited a predominantly buffered response to changes in BRG1 levels. Collectively, our findings demonstrate a genomic feature-specific response to BRG1 dosage, shedding light on the dosage-sensitive effects of mSWI/SNF complex defects in cancer and other diseases.

Indexed as

DNA HelicasesGene DosageNuclear ProteinsTranscription FactorsAnimalsChromatinChromosomal Proteins, Non-HistoneEnhancer Elements, GeneticGene Expression RegulationHumansMicePromoter Regions, GeneticChromatinChromosomal Proteins, Non-HistoneDNA HelicasesNuclear ProteinsSMARCA4 protein, humanSmarca4 protein, mouseTranscription Factors

Identifiers

PMID40846763
PMCPMC12425804

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.