Evidence map›Paper›PMID 40846705›Full record

ArticleNature communications2025

Exploring the space of self-reproducing ribozymes using generative models.

Camille N Lambert, Vaitea Opuu, Francesco Calvanese, Polina Pavlinova, Francesco Zamponi, Eric J Hayden, Martin Weigt, Matteo Smerlak, Philippe Nghe

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Camille N Lambert *Laboratoire de Biophysique et Evolution, UMR CNRS-ESPCI 8231 Chimie Biologie Innovation, ESPCI Paris, Université PSL, Paris, France.ORCID http://orcid.org/0000-0002-4805-1013
Vaitea Opuu *Laboratoire de Biophysique et Evolution, UMR CNRS-ESPCI 8231 Chimie Biologie Innovation, ESPCI Paris, Université PSL, Paris, France.ORCID http://orcid.org/0000-0001-8364-5098
Francesco Calvanese *Laboratoire de Biophysique et Evolution, UMR CNRS-ESPCI 8231 Chimie Biologie Innovation, ESPCI Paris, Université PSL, Paris, France.
Polina PavlinovaLaboratoire de Biophysique et Evolution, UMR CNRS-ESPCI 8231 Chimie Biologie Innovation, ESPCI Paris, Université PSL, Paris, France.ORCID http://orcid.org/0000-0003-4269-5632
Francesco ZamponiDipartimento di Fisica, Sapienza Università di Roma, Rome, Italy.ORCID http://orcid.org/0000-0001-9260-1951
Eric J HaydenBiomolecular Sciences Graduate Programs, Boise State University, Boise, ID, USA.ORCID http://orcid.org/0000-0001-6078-5418
Martin WeigtSorbonne Université, CNRS, Laboratoire de Biologie Computationnelle, Quantitative et Synthétique, UMR 7238, Paris, France.
Matteo SmerlakLaboratoire de Biophysique et Evolution, UMR CNRS-ESPCI 8231 Chimie Biologie Innovation, ESPCI Paris, Université PSL, Paris, France.ORCID http://orcid.org/0000-0002-0844-8868
Philippe NgheLaboratoire de Biophysique et Evolution, UMR CNRS-ESPCI 8231 Chimie Biologie Innovation, ESPCI Paris, Université PSL, Paris, France. philippe.nghe@espci.psl.eu.ORCID http://orcid.org/0000-0003-3690-4610

Funding

Agence Nationale de la Recherche (French National Research Agency) ANR-10-EQPX-34EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) AbioEvo 101002075EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) MSCA-RISE In-ferNet 734439Human Frontier Science Program (HFSP) RGY0077/2019
6 · The paper itself

Abstract

Estimating the plausibility of RNA self-reproduction is central to origin-of-life scenarios. However, this property has been shown in only a handful of catalytic RNAs. Here, we compare models for their generative power in diversifying a reference ribozyme, based on statistical covariation and secondary structure prediction, and experimentally test model predictions using high-throughput sequencing. Leveraging statistical physics methods, we compute the number of ribozymes capable of autocatalytic self-reproduction from oligonucleotide fragments to be over 10

Indexed as

RNA, CatalyticHigh-Throughput Nucleotide SequencingMutationNucleic Acid ConformationOrigin of LifeRNA, Catalytic

Identifiers

PMID40846705
PMCPMC12373953

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.