Evidence map›Paper›PMID 40845805›Full record

ArticleMolecular cell2025

A widespread family of viral sponge proteins reveals specific inhibition of nucleotide signals in anti-phage defense.

Renee B Chang, Hunter C Toyoda, Samuel J Hobbs, Romi Hadary, Desmond Richmond-Buccola, Tanita Wein, Ilya Osterman, Nils Burger, Edward T Chouchani, Rotem Sorek and 1 more

Abstract read
In one paragraph

Article in Molecular cell, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Balancing of immune activation and suppression during phage infection.bioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Phage RyR-domain proteins degrade ADPR-based immune signals and fuel NADbioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Article
  9. CBASS limits bacteriophage production while maintaining cell viability inbioRxiv : the preprint server for biology · 2026
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Renee B ChangDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Hunter C ToyodaDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Samuel J HobbsDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Romi HadaryDepartment of Molecular Genetics, Weizmann Institute of Science 7610001, Rehovot, Israel.
Desmond Richmond-BuccolaDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Tanita WeinDepartment of Molecular Genetics, Weizmann Institute of Science 7610001, Rehovot, Israel.
Ilya OstermanDepartment of Molecular Genetics, Weizmann Institute of Science 7610001, Rehovot, Israel.
Nils BurgerDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA.
Edward T ChouchaniDepartment of Cell Biology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.
Rotem SorekDepartment of Molecular Genetics, Weizmann Institute of Science 7610001, Rehovot, Israel.
Philip J KranzuschDepartment of Microbiology, Harvard Medical School, Boston, MA 02115, USA; Department of Cancer Immunology and Virology, Dana-Farber Cancer Institute, Boston, MA 02115, USA; Parker Institute for Cancer Immunotherapy at Dana, Farber Cancer Institute, Boston, MA 02115, USA. Electronic address: philip_kranzusch@dfci.harvard.edu.

Funding

X-ray Scattering Technology CoreP30GM133893 · NIGMS · BROOKHAVEN SCIENCE ASSOC-BROOKHAVEN LAB · PI Sean McSweeney · 2019 to 2026
$38.6M
Determining mechanisms of the succinate thermogenesis pathways on UCP1-dependent and UCP1-independent thermogenesisR01DK123095 · NIDDK · DANA-FARBER CANCER INST · PI Edward Thomas Chouchani · 2019 to 2026
$4.2M
Targeting SHP-1 through a newfound metabolite-regulated cysteine activation siteR01AI175317 · NIAID · DANA-FARBER CANCER INST · PI Edward Thomas Chouchani · 2023 to 2026
$3.3M
Defining the landscape and mechanisms of protein redox regulation during agingR01AG071966 · NIA · DANA-FARBER CANCER INST · PI Edward Thomas Chouchani · 2022 to 2026
$2.9M
Discovery of cGAS-like signaling enzymes in innate immunity and diseaseDP2GM146250 · NIGMS · DANA-FARBER CANCER INST · PI KRANZUSCH, PHILIP J · 2021 to 2024
$2.5M
Defining the landscape and mechanisms of protein redox regulation during agingR56AG071966 · NIA · DANA-FARBER CANCER INST · PI CHOUCHANI, EDWARD THOMAS · 2021 to 2021
$344k
NIAID NIH HHS R01 AI175317NIA NIH HHS R01 AG071966NIA NIH HHS R56 AG071966NIDDK NIH HHS R01 DK123095NIGMS NIH HHS DP2 GM146250NIGMS NIH HHS P30 GM133893
6 · The paper itself

Abstract

Cyclic oligonucleotide-based anti-phage signaling systems (CBASSs) are bacterial anti-phage defense operons that use nucleotide signals to control immune activation. Here, we biochemically screen 57 diverse E. coli and Bacillus phages for the ability to disrupt CBASS immunity and discover anti-CBASS 4 (Acb4) from the Bacillus phage SPO1 as the founding member of a large family of >1,300 immune evasion proteins. A 2.1 Å crystal structure of Acb4 in complex with 3'3'-cyclic guanosine monophosphate (GMP)-AMP (3'3'-cGAMP) reveals a tetrameric assembly that functions as a sponge to sequester CBASS signals and inhibit immune activation. We demonstrate that Acb4 alone is sufficient to disrupt CBASS activation in vitro and enable immune evasion in vivo. Analyzing phages that infect diverse bacteria, we explain how Acb4 selectively targets nucleotide signals in host defense and avoids disruption of cellular homeostasis. Together, our results reveal principles of immune evasion protein evolution and explain a major mechanism phages use to inhibit host immunity.

Indexed as

Bacillus PhagesEscherichia coliViral ProteinsBacterial ProteinsCrystallography, X-RayImmune EvasionModels, MolecularNucleotides, CyclicSignal TransductionBacterial Proteinscyclic guanosine monophosphate-adenosine monophosphateNucleotides, CyclicViral Proteinsanti-CBASSnucleotide immune signalingviral immune evasionviral sponge

Identifiers

PMID40845805
PMCPMC12380128

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.