Evidence map›Paper›PMID 40844321›Full record

ArticleGut microbes2025

Increased reflux secondary bile acids are associated with changes to the microbiome and transcriptome in Barrett's esophagus.

Ceylan Tanes, Yun Li, Gary W Falk, Gregory G Ginsberg, Kenneth K Wang, Prasad G Iyer, Charles J Lightdale, Armando Del Portillo, Stephen M Lagana, Timothy C Wang and 8 more

Abstract readMulticenter Study
In one paragraph

Article in Gut microbes, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. The Microbiome and Esophageal Disease: Where Are We Now?Current gastroenterology reports · 2026
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Ceylan TanesDivision of Gastroenterology, Hepatology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0002-5823-4059
Yun LiDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Gary W FalkDivision of Gastroenterology and Hepatology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Gregory G GinsbergDivision of Gastroenterology and Hepatology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Kenneth K WangDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, MN, USA.
Prasad G IyerDivision of Gastroenterology and Hepatology, Mayo Clinic, Scottsdale, AZ, USA.
Charles J LightdaleDivision of Digestive & Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.
Armando Del PortilloDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Stephen M LaganaDepartment of Pathology and Cell Biology, Columbia University Irving Medical Center, New York, NY, USA.
Timothy C WangDivision of Digestive & Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.
Anil K RustgiDivision of Digestive & Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.
Michael QuanteDepartment of Medicine II, University of Freiburg, Freiburg, Germany.
Zhezhen JinDepartment of Biostatistics, Mailman School of Public Health, Columbia University, New York, NY, USA.
Gary D WuDivision of Gastroenterology and Hepatology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Elliot S FriedmanDivision of Gastroenterology and Hepatology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Kyle BittingerDivision of Gastroenterology, Hepatology and Nutrition, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Hongzhe LiDepartment of Biostatistics, Epidemiology and Informatics, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA.
Julian A AbramsDivision of Digestive & Liver Diseases, Columbia University Irving Medical Center, New York, NY, USA.ORCID 0000-0002-6021-9376

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GARY D. WU · 1997 to 2026
$32.5M
Transformed Esophageal Epithelial Cells and the Tumor MicroenvironmentP01CA098101 · NCI · UNIVERSITY OF PENNSYLVANIA · PI RUSTGI, ANIL K · 2003 to 2023
$31.7M
Weight loss-induced Microbiome and Adipokine Changes in Barrett's EsophagusU54CA163004 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ABRAMS, JULIAN, RUSTGI, ANIL K · 2011 to 2022
$12.5M
The Organoid and Cell Culture CoreP30DK132710 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Robert F. Schwabe · 2022 to 2026
$7.2M
The Role of Secondary Bile Acids in Gastro-Esophageal NeoplasiaR01CA272898 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Julian Abrams, Michael Quante · 2022 to 2026
$4.1M
The Role of the Microbiome and Notch Signaling in Esophageal AdenocarcinomaR01CA255298 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ABRAMS, JULIAN · 2021 to 2025
$3.1M
NCI NIH HHS P01 CA098101NCI NIH HHS P30 CA013696NCI NIH HHS R01 CA255298NCI NIH HHS R01 CA272898NCI NIH HHS U54 CA163004NIDDK NIH HHS P30 DK050306NIDDK NIH HHS P30 DK132710
6 · The paper itself

Abstract

Bile acids are a major component of gastro-esophageal refluxate, thought to contribute to the development of Barrett's esophagus (BE) and esophageal adenocarcinoma (EAC). As the microbiome shifts with EAC progression and bile acids influence bacterial composition, we examined these connections in a multi-center, cross-sectional study. We analyzed biospecimens from patients undergoing endoscopy using LC-MS to quantify bile acids in gastric aspirates, 16S rRNA sequencing for tissue microbiome profiling, and RNA sequencing on BE or cardia tissue. Among 153 patients (52 controls, 101 BE: 50 no dysplasia, 10 indefinite, 17 low-grade dysplasia, 17 high-grade dysplasia, and 7 EAC), we observed increased

Indexed as

BacteriaBarrett EsophagusBile Acids and SaltsGastroesophageal RefluxGastrointestinal MicrobiomeTranscriptomeAdenocarcinomaAgedCross-Sectional StudiesEsophageal NeoplasmsFemaleHumansMaleMiddle AgedRNA, Ribosomal, 16SBile Acids and SaltsRNA, Ribosomal, 16SBarrett’s esophagusbile acidsesophageal adenocarcinomamicrobiome

Identifiers

PMID40844321
PMCPMC12377100

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.