Evidence map›Paper›PMID 40844114›Full record

ArticleACS nano2025

Time-Resolved Fluorescence Imaging and Correlative Cryo-Electron Tomography to Study Structural Changes of the HIV-1 Capsid.

Zaida K Rodriguez, Jonathan R Andino-Moncada, Sergey A Buth, Atousa Mehrani, Ahinsa Ranaweera, Jincheng Shi, Leonardo R Andrade, Satya Prakash Singh, Timothy S Strutzenberg, Mariana Marin and 7 more

Abstract read
In one paragraph

Article in ACS nano, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Zaida K RodriguezThe Salk Institute for Biological Sciences, La Jolla, San Diego, California 92037, United States.
Jonathan R Andino-MoncadaInstitute of Molecular Biophysics and Department of Biological Sciences, Florida State University, Tallahassee, Florida 32306, United States.
Sergey A ButhDepartment of Pediatrics, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Atousa MehraniThe Salk Institute for Biological Sciences, La Jolla, San Diego, California 92037, United States.
Ahinsa RanaweeraInstitute of Molecular Biophysics and Department of Biological Sciences, Florida State University, Tallahassee, Florida 32306, United States.
Jincheng ShiInstitute of Molecular Biophysics and Department of Biological Sciences, Florida State University, Tallahassee, Florida 32306, United States.
Leonardo R AndradeThe Salk Institute for Biological Sciences, La Jolla, San Diego, California 92037, United States.
Satya Prakash SinghInstitute of Molecular Biophysics and Department of Biological Sciences, Florida State University, Tallahassee, Florida 32306, United States.ORCID 0000-0001-8539-0295
Timothy S StrutzenbergThe Salk Institute for Biological Sciences, La Jolla, San Diego, California 92037, United States.
Mariana MarinDepartment of Pediatrics, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Ricardo Guerrero-FerreiraRobert P. Apkarian Integrated Electron Microscopy Core, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Hamid RahmaniDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, San Diego, California 92037, United States.
Danielle A GrotjahnDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, San Diego, California 92037, United States.
Scott StaggInstitute of Molecular Biophysics and Department of Biological Sciences, Florida State University, Tallahassee, Florida 32306, United States.
Gregory B MelikyanDepartment of Pediatrics, Emory University School of Medicine, Atlanta, Georgia 30322, United States.
Dmitry LyumkisThe Salk Institute for Biological Sciences, La Jolla, San Diego, California 92037, United States.
Ashwanth C FrancisInstitute of Molecular Biophysics and Department of Biological Sciences, Florida State University, Tallahassee, Florida 32306, United States.ORCID 0000-0002-8663-2038

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Alan Saghatelian · 1985 to 2026
$82.8M
NCCAT: National Center for CryoEM Access and Training- Supplement for Windows 10 and FFIU24GM129539 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI DE MARCO, ALEX, KIEFT, JEFFREY S · 2018 to 2023
$53.9M
Structural Biology CoreU54AI170855 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI Bruce Edward Torbett · 2022 to 2026
$36.7M
Pacific Northwest Center for Cryo-EM: Equipment SupplementR24GM154185 · NIGMS · OREGON HEALTH & SCIENCE UNIVERSITY · PI James E Evans, CLAUDIA SUSANA LOPEZ · 2024 to 2026
$21.5M
Pathways in Biological Sciences Training ProgramT32GM133351 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Matthew Daugherty, Randolph Y. Hampton · 2020 to 2026
$9.9M
Functionally Defining HIV-Host Interactions During the Early HIV-1 LifecycleR01AI150998 · NIAID · NORTHWESTERN UNIVERSITY AT CHICAGO · PI BIENIASZ, PAUL D., HOPE, THOMAS · 2020 to 2024
$6.8M
San Diego Nathan Shock CenterP30AG068635 · NIA · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI SHARPEE, TATYANA O. · 2020 to 2024
$6.0M
The Southeastern Center for Microscopy of Macromolecular Machines (SECM4)R24GM145964 · NIGMS · FLORIDA STATE UNIVERSITY · PI SCOTT M STAGG · 2022 to 2026
$5.5M
Imaging of Single HIV-1 Uncoating and Transport to the nucleusR01AI129862 · NIAID · EMORY UNIVERSITY · PI KVARATSKHELIA, MAMUKA, MELIKIAN, GREGORY B · 2017 to 2025
$5.4M
Structural basis for activity of and resistance to HIV integrase inhibitorsU01AI136680 · NIAID · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI LYUMKIS, DMITRY · 2022 to 2025
$3.4M
Role of HIV-1 integrase in virion morphogenesis and its targeting by allosteric integrase inhibitorsR01AI184419 · NIAID · UNIVERSITY OF COLORADO DENVER · PI JAMES R FUCHS, Sebla B. Kutluay · 2024 to 2026
$2.4M
Purchase of a FEI Titan Krios for 3-D EMS10RR025080 · NCRR · FLORIDA STATE UNIVERSITY · PI TAYLOR, KENNETH ALLEN · 2008 to 2008
$2.0M
NCI NIH HHS P30 CA014195NCRR NIH HHS S10 RR024564NCRR NIH HHS S10 RR025080NIAID NIH HHS R01 AI129862NIAID NIH HHS R01 AI150998NIAID NIH HHS R01 AI184419NIAID NIH HHS R21 AI174879NIAID NIH HHS U01 AI136680NIAID NIH HHS U54 AI170855NIA NIH HHS P30 AG068635NIGMS NIH HHS F32 GM148049NIGMS NIH HHS R24 GM145964NIGMS NIH HHS R24 GM154185NIGMS NIH HHS T32 GM133351NIGMS NIH HHS U24 GM129539
6 · The paper itself

Abstract

The conical HIV-1 capsid protects the internal viral genome and facilitates the infection of target cells. Highly potent antivirals, such as the clinically approved drug Lenacapavir (LEN), block HIV-1 replication by changing the capsid structure and modulating its function. However, structural studies of the HIV-1 capsid, its disassembly, or stabilization by antivirals have been challenging. Here, we developed a correlative light and cryo-electron microscopy (CLEM) workflow to characterize HIV-1 capsid morphology, starting from a small volume of viral particles harvested from cellular supernatants. We report two critical improvements in sample preparation, namely, (1) affinity capture and retention of fluorescent HIV-1 particles on cryo-EM grids to enable mapping virus/capsid location prior to sample vitrification and (2) streamlined alignment protocols to subsequently identify and correlate regions of interest in fluorescence and cryo-EM images. These improvements enable a reproducible CLEM workflow to accurately locate capsids for cryo-electron tomography (cryo-ET) studies. Using this approach, we resolved ultrastructures of HIV-1 capsids treated with LEN and the cellular metabolite inositol hexaphosphate (IP6), revealing distinct modes of capsid lattice stabilization. Finally, using our CLEM workflow, we demonstrate the feasibility of correlating time-resolved fluorescence imaging of capsid disassembly to end point cryo-ET structures. These advances will facilitate in vitro structural studies to define the mechanisms of HIV-1 capsid stabilization and disassembly. The CLEM workflow developed here can also be extended to studying structural changes in other viruses in response to diverse stimuli.

Indexed as

CapsidCryoelectron MicroscopyElectron Microscope TomographyHIV-1Optical ImagingHumansCLEMcryo-ETHIV-1 capsid uncoatingIP6lenacapavir

Identifiers

PMID40844114
PMCPMC12409903

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.