Evidence map›Paper›PMID 40843461›Full record

ArticleIEEE transactions on signal processing : a publication of the IEEE Signal Processing Society2024

Principal Component Analysis in Space Forms.

Puoya Tabaghi, Michael Khanzadeh, Yusu Wang, Siavash Mirarab

Abstract read
In one paragraph

Article in IEEE transactions on signal processing : a publication of the IEEE Signal Processing Society, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Puoya TabaghiHalicioğlu Data Science Institute, University of California San Diego, San Diego, CA 92093 USA.ORCID 0000-0002-1914-5950
Michael KhanzadehComputer Science and Engineering Department, University of California San Diego, San Diego, CA 92093 USA. He is now with the Department of Computer Science, Columbia University, New York, NY 10027 USA.ORCID 0009-0005-3227-7850
Yusu WangHalicioğlu Data Science Institute, University of California San Diego, San Diego, CA 92093 USA.ORCID 0000-0001-7950-4348
Siavash MirarabElectrical and Computer Engineering Department, University of California San Diego, San Diego, CA 92093 USA.ORCID 0000-0001-5410-1518

Funding

Biology-aware machine learning methods for characterizing microbiome genotype and phenotypeR35GM142725 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI MIR ARABBAYGI, SIAVASH · 2021 to 2025
$1.9M
NIGMS NIH HHS R35 GM142725
6 · The paper itself

Abstract

Principal Component Analysis (PCA) is a workhorse of modern data science. While PCA assumes the data conforms to Euclidean geometry, for specific data types, such as hierarchical and cyclic data structures, other spaces are more appropriate. We study PCA in space forms; that is, those with constant curvatures. At a point on a Riemannian manifold, we can define a Riemannian affine subspace based on a set of tangent vectors. Finding the optimal low-dimensional affine subspace for given points in a space form amounts to dimensionality reduction. Our Space Form PCA (SFPCA) seeks the affine subspace that best represents a set of manifold-valued points with the minimum projection cost. We propose proper cost functions that enjoy two properties: (1) their optimal affine subspace is the solution to an eigenequation, and (2) optimal affine subspaces of different dimensions form a nested set. These properties provide advances over existing methods, which are mostly iterative algorithms with slow convergence and weaker theoretical guarantees. We evaluate the proposed SFPCA on real and simulated data in spherical and hyperbolic spaces. We show that it outperforms alternative methods in estimating true subspaces (in simulated data) with respect to convergence speed or accuracy, often both.

Indexed as

hyperbolic and spherical spacesPrincipal component analysisRiemannian manifolds

Identifiers

PMID40843461
PMCPMC12366648

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.