Evidence map›Paper›PMID 40842645›Full record

ArticleNeuro-oncology advances

Bridging the clinical gap: Confidence informed IDH prediction in brain gliomas using MRI and deep learning.

Chandan Ganesh Bangalore Yogananda, Nghi C D Truong, Benjamin C Wagner, Yin Xi, Jason Bowerman, Divya D Reddy, James M Holcomb, Niloufar Saadat, Kimmo J Hatanpaa, Toral R Patel and 7 more

Abstract read
In one paragraph

Article in Neuro-oncology advances. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Chandan Ganesh Bangalore YoganandaDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.ORCID https://orcid.org/0000-0001-8853-3036
Nghi C D TruongDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Benjamin C WagnerDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Yin XiDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Jason BowermanDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Divya D ReddyDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
James M HolcombDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Niloufar SaadatDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Kimmo J HatanpaaDepartment of Pathology, UT Southwestern Medical Center, Dallas, Texas, USA.
Toral R PatelDepartment of Neurological Surgery, UT Southwestern Medical Center, Dallas, Texas, USA.
Baowei FeiDepartment of Bioengineering, UT Dallas, Richardson, Texas, USA.
Matthew D LeeDepartment of Radiology, NYU Grossman School of Medicine, New York, New York, USA.
Rajan JainDepartment of Neurosurgery, NYU Grossman School of Medicine, New York, New York, USA.ORCID https://orcid.org/0000-0002-4879-0457
Richard J BruceDepartment of Radiology, University of Wisconsin School of Medicine, Madison, Wisconsin, USA.
Ananth J MadhuranthakamDepartment of Radiology Mayo Clinic, Rochester, Minnesota, USA.
Marco C PinhoDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.
Joseph A MaldjianDepartment of Radiology, UT Southwestern Medical Center, Dallas, Texas, USA.

Funding

Quantitative Non-Contrast Perfusion using Arterial Spin Labeling for Assessment of Cancer Therapy ResponseU01CA207091 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MADHURANTHAKAM, ANANTH J, MALDJIAN, JOSEPH A · 2017 to 2022
$3.1M
Virtual Biopsy with Tissue-level Accuracy in GliomaR01CA260705 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MALDJIAN, JOSEPH A · 2021 to 2025
$3.1M
NCI NIH HHS R01 CA260705NCI NIH HHS U01 CA207091
6 · The paper itself

Abstract

Background: The isocitrate dehydrogenase (IDH) mutation status is a key molecular marker in diagnosing and treating brain tumors. Currently, it is determined via invasive tissue biopsy. Recent advances in deep learning (DL) have offered promising non-invasive alternatives for determining IDH status. However, their clinical translation is hindered by a significant gap between DL predictions and their clinical applicability. The limited transparency of many DL-networks and inadequate evaluation metrics hinders trust and adoption, as clinicians require clear and validated insights for determining IDH status. These challenges highlight the need for robust validation and measures of predictive reliability to make DL-predictions clinically actionable. Methods: We developed a unique approach for non-invasive prediction of IDH status using MRI. We combine a voxel-wise-segmentation network(MC-net) with Bayesian logistic regression (BLR) to provide an IDH status and estimate confidence scores. We utilized a comprehensive dataset of 2,481 glioma cases from eight institutions. Results: Our framework(MC-net + BLR) demonstrated robust performance achieving 96.4% and 95.1% classification accuracies on diverse databases, with an AUC of 0.98. The BLR was implemented exclusively on held-out test data, ensuring that the derived confidence scores are independent of the training or validation phases. The derived confidence scores showed a low Brier score of 0.0125, highlighting its superior calibration and uncertainty quantification. Conclusion: The developed framework provides an IDH status and a confidence score, offering clinicians an additional layer of assurance in prediction reliability. It bridges the gap between high-performing DL models and their clinical applicability by addressing the challenges in prediction reliability. Our framework is a significant advancement in non-invasive determination of IDH-status and confidence-informed therapeutic decision-making in neuro-oncology.

Indexed as

brain gliomaCNNconfidence scoredeep learningIDH classification

Identifiers

PMID40842645
PMCPMC12365901

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.