Evidence map›Paper›PMID 40842626›Full record

ArticleFrontiers in genetics2025

High-throughput PacBio library preparation and sequencing techniques for genomic DNA and TNA.

Meghan L Bentz, Cristina Clines, Jasmine Padilla, Christopher Horn, Justin Lee, Mili Sheth

Abstract read
In one paragraph

Article in Frontiers in genetics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Meghan L BentzGenomics Sequencing Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States.
Cristina ClinesGenomics Sequencing Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States.
Jasmine PadillaGenomics Sequencing Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States.
Christopher HornGenomics Sequencing Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States.
Justin LeeInfluenza Division, Centers for Disease Control and Prevention, Atlanta, GA, United States.
Mili ShethGenomics Sequencing Laboratory, Centers for Disease Control and Prevention, Atlanta, GA, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

PacBio Sequencing is an effective tool for achieving long read lengths to close gaps in whole genome assemblies. Limited information is available for automated, high-throughput library preparation workflows for PacBio sequencing. This paper describes two high throughput methods, one for producing barcoded genomic DNA libraries and one for barcoded cDNA and subsequent library preparation, as well as pooling and sequencing on the Sequel II instrument. Test sequencing was performed on 380 genomic DNA samples, of which 28 (7.4%) failed sequencing and needed to be repeated. Test sequencing was performed on 384 Threose nucleic acid samples of which 0 failed sequencing and 49 (12.8%) had a genome coverage <90%. These methods were used to generate and report results for ∼2,000 genomic DNA and ∼30,000 cDNA genome sequences from clinical specimens in 2023.

Indexed as

automationCOVIDgDNAhigh throughputmethodsPacBiosequencingWGS whole-genome sequencing

Identifiers

PMID40842626
PMCPMC12364924

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.