Evidence map›Paper›PMID 40841770›Full record

ArticleNature microbiology2025

Ume6 protein complexes connect morphogenesis, adherence and hypoxic genes to shape Candida albicans biofilm architecture.

Eunsoo Do, C Joel McManus, Robert Zarnowski, Manning Y Huang, Katharina Goerlich, David R Andes, Aaron P Mitchell

Abstract read
In one paragraph

Article in Nature microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Two Ume6 target gene classes in the biofilm regulatory network ofbioRxiv : the preprint server for biology · 2026
    Article
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  9. Impact ofmSphere · 2026
    Article
  10. The pathogenicity and future treatment strategies ofFrontiers in cellular and infection microbiology · 2026
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Eunsoo DoDepartment of Microbiology, University of Georgia, Athens, GA, USA.ORCID http://orcid.org/0000-0002-7945-2450
C Joel McManusDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0002-6605-2642
Robert ZarnowskiDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI, USA.ORCID http://orcid.org/0000-0001-6343-1500
Manning Y HuangDepartment of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA.ORCID http://orcid.org/0000-0001-6045-9698
Katharina GoerlichDepartment of Microbiology, University of Georgia, Athens, GA, USA.
David R AndesDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI, USA.ORCID http://orcid.org/0000-0002-7927-9950
Aaron P MitchellDepartment of Microbiology, University of Georgia, Athens, GA, USA. Aaron.Mitchell@uga.edu.ORCID http://orcid.org/0000-0002-0868-4000

Funding

Vesicle-mediated drug resistance of Candida albicans biofilmR01AI073289 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI ANDES, DAVID R, MITCHELL, AARON P · 2008 to 2025
$7.9M
Microbial Pathogenesis and Host DefenseT32AI060537 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joanne N. Engel · 2004 to 2026
$6.5M
Functional Analysis of Natural Variation in the Pathogen Candida albicansR01AI146103 · NIAID · UNIVERSITY OF GEORGIA · PI MITCHELL, AARON P · 2019 to 2023
$2.6M
NIAID NIH HHS R01 AI073289NIAID NIH HHS R01 AI146103NIAID NIH HHS T32 AI060537University of Georgia (UGA) Distinguished Research ProfessorshipU.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) AI073289
6 · The paper itself

Abstract

Biofilms of the fungal pathogen Candida albicans can form on implanted medical devices and contribute to fungal virulence and are recalcitrant to antifungal therapy. The transcription factor Ume6 directs hyphal cell elongation and thus promotes biofilm formation in C. albicans. However, how exactly this key biofilm and virulence regulator functions has remained unclear. Here RNA sequencing and chromatin immunoprecipitation with sequencing data show that Ume6 binds to and activates multiple biofilm-relevant genes. Ume6-associated sequence motifs correspond to binding sites for biofilm master regulators Efg1 and Ndt80, and hypoxic response regulator Upc2. Co-immunoprecipitation assays show the existence of Ume6-Efg1, Ume6-Ndt80 and Ume6-Upc2 protein complexes. Promoter binding of Ume6 is partially dependent upon Efg1, Ndt80 or Upc2, as is Ume6 target gene activation, thus indicating that the protein complexes function to drive Ume6-target gene interaction. Ume6 therefore acts as a bridge that connects the hyphal morphogenesis and adherence genes that shape biofilm architecture and the hypoxic response genes required for growth in the low-oxygen biofilm environment. These findings are vital for our understanding of the pathobiology of C. albicans and could open the way to new treatment options.

Indexed as

BiofilmsCandida albicansFungal ProteinsTranscription FactorsCell AdhesionDNA-Binding ProteinsGene Expression Regulation, FungalHyphaeMorphogenesisPromoter Regions, GeneticProtein BindingDNA-Binding ProteinsEFG1 protein, Candida albicansFungal ProteinsTranscription Factors

Identifiers

PMID40841770
PMCPMC12408341

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.