Evidence map›Paper›PMID 40841456›Full record

ArticleCommunications medicine2025

Liquid biopsy diagnostics for non-small cell lung cancer via elucidation of tRNA signatures.

Zhuokun Feng, Masaki Nasu, Gehan Devendra, Ayman A Abdul-Ghani, Owen T M Chan, Jeffrey A Borgia, Zitong Gao, Hanqiu Zhang, Yu Chen, Ting Gong and 5 more

Abstract read
In one paragraph

Article in Communications medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Zhuokun FengDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.
Masaki NasuDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.
Gehan DevendraThe Queen's Medical Center, Honolulu, HI, USA.
Ayman A Abdul-GhaniPali Momi Medical Center, Honolulu, HI, USA.
Owen T M ChanPathology Core Shared Resource, University of Hawaii Cancer Center, Honolulu, HI, USA.
Jeffrey A BorgiaRUSH University Medical Center, Chicago, IL, USA.ORCID http://orcid.org/0000-0002-1520-7966
Zitong GaoDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.
Hanqiu ZhangDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.
Yu ChenDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.ORCID http://orcid.org/0000-0003-1348-8992
Ting GongDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.
Gang LuoIllinois Institute of Technology, Chicago, IL, USA.
Hua YangDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA.ORCID http://orcid.org/0000-0002-4573-3932
Lang WuPacific Center for Genome Research, University of Hawaii Cancer Center, Honolulu, HI, USA. lwu@cc.hawaii.edu.ORCID http://orcid.org/0000-0001-9938-3627
Yuanyuan FuDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA. fuy@hawaii.edu.
Youping DengDepartment of Quantitative Health Sciences, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA. dengy@hawaii.edu.ORCID http://orcid.org/0000-0002-5951-8213

Funding

AIM-AHEAD Coordinating Center - All Four CoresOT2OD032581 · OD · UNIVERSITY OF NORTH TEXAS HLTH SCI CTR · PI Paul Avillach, Bettina M. Beech · 2021 to 2026
$168.7M
UH Hilo COP A&RP20GM103466 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Peter R Hoffmann · 2012 to 2026
$60.3M
The Role of gp120 on Cardiovascular Disease in People Living with HIVU54MD007601 · NIMHD · UNIVERSITY OF HAWAII AT MANOA · PI Noemi Polgar · 2017 to 2026
$59.5M
University of Hawaii Cancer Center CCSGP30CA071789 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI Xin Chen · 1996 to 2026
$56.2M
Urgent Competitive Revision to Existing NIH Grants and Cooperative Agreements (Urgent Supplement - Clinical Trial Optional)U24MD015970 · NIMHD · MOREHOUSE SCHOOL OF MEDICINE · PI Sandra Perreira Chang, Elizabeth O. Ofili · 2020 to 2026
$20.6M
Tracking and Evaluation CoreU54GM138062 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI SY, ANGELA U · 2021 to 2025
$15.5M
Selenium Metabolism in the Heart: Impact of High Fructose and Low SeleniumP20GM139753 · NIGMS · UNIVERSITY OF HAWAII AT MANOA · PI Christoph Alexander Rettenmeier · 2022 to 2026
$13.3M
Pacific Center for Genome ResearchU54HG013243 · NHGRI · UNIVERSITY OF HAWAII AT MANOA · PI Alexandra Margaret Lynn Binder, Youping Deng · 2023 to 2026
$10.8M
Profiling genome-wide circulating ncRNAs for the early detection of lung cancerR01CA223490 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI DENG, YOUPING · 2018 to 2022
$3.1M
Circulating lipid and miRNA markers for early detection of breast cancer among women with abnormal mammogramsR01CA230514 · NCI · UNIVERSITY OF HAWAII AT MANOA · PI DENG, YOUPING · 2019 to 2023
$2.8M
The Hawaii Advanced Training in Artificial Intelligence for Precision Nutrition Science Research (AIPrN)T32DK137523 · NIDDK · UNIVERSITY OF HAWAII AT MANOA · PI Youping Deng, RACHEL NOVOTNY · 2023 to 2026
$1.7M
Pacific Computational Genomics and Data Sciences Research Education ProgramUE5HG013826 · NHGRI · UNIVERSITY OF HAWAII AT MANOA · PI DENG, YOUPING, ZHANG, YIQIANG · 2024 to 2024
$486k
NCI NIH HHS P30 CA071789NCI NIH HHS R01 CA223490NCI NIH HHS R01 CA230514NHGRI NIH HHS U54 HG013243NHGRI NIH HHS UE5 HG013826NIDDK NIH HHS T32 DK137523NIGMS NIH HHS P20 GM103466NIGMS NIH HHS P20 GM139753NIGMS NIH HHS U54 GM138062NIH HHS OT2 OD032581NIMHD NIH HHS U24 MD015970NIMHD NIH HHS U54 MD007601U.S. Department of Health & Human Services | National Institutes of Health (NIH) 1OT2OD032581-02-PP90YU.S. Department of Health & Human Services | National Institutes of Health (NIH) 1UE5HG013826U.S. Department of Health & Human Services | National Institutes of Health (NIH) 3OT2OD032581-01S5-895U.S. Department of Health & Human Services | National Institutes of Health (NIH) P20GM103466U.S. Department of Health & Human Services | National Institutes of Health (NIH) P20GM139753U.S. Department of Health & Human Services | National Institutes of Health (NIH) P30CA071789U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA223490U.S. Department of Health & Human Services | National Institutes of Health (NIH) RCC-004UHI-PilotU.S. Department of Health & Human Services | National Institutes of Health (NIH) T32DK137523U.S. Department of Health & Human Services | National Institutes of Health (NIH) U24MD015970U.S. Department of Health & Human Services | National Institutes of Health (NIH) U54GM138062U.S. Department of Health & Human Services | National Institutes of Health (NIH) U54HG013243U.S. Department of Health & Human Services | National Institutes of Health (NIH) U54MD007601
6 · The paper itself

Abstract

backgroundLung cancer, particularly non-small cell lung cancer (NSCLC), accounts for about 85% of all lung cancer cases and remains a major global health challenge. Traditional diagnostic methods, such as chest X-rays and low-dose CT scans, have limitations, including high false-positive rates, radiation risks, and the invasiveness of tissue biopsies. This study aims to develop a non-invasive liquid biopsy approach for early NSCLC diagnosis.

methodsWe developed a machine-learning model to analyze small RNA sequencing data from 1446 tissue samples to identify a diagnostic tRNA signature. This signature was independently validated using the in-house data of 233 plasma exosome samples. Diagnostic performance was assessed using Area Under the Curve (AUC) metrics. Signature tRNAs were then evaluated across various clinical and demographic variables, with further survival analysis and functional studies to explore the molecular role of the signature tRNAs.

resultsWe identify a robust six-tRNA signature with strong diagnostic performance, achieving AUC values of 0.97 in discovery, 0.96 in hold-out validation, and 0.84 in independent validation. The signature effectively distinguishes cancerous from benign samples (AUC = 0.85) and consistently performs across clinical and demographic variables, with AUC values exceeding 0.80, particularly for early-stage lung cancer diagnosis. Additionally, three signature tRNAs demonstrate prognostic value for independent survival prediction. Functional studies suggest potential regulatory roles of specific tRNAs and their associated fragments in tumor metabolism pathways.

conclusionsThis research underscores the diagnostic power of tRNA signature for NSCLC liquid biopsy and provides epigenetic insights that enhance our understanding of oncogenic molecular pathophysiology.

Identifiers

PMID40841456
PMCPMC12370967

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.