Evidence map›Paper›PMID 40841396›Full record

ArticleScientific reports2025

Integrated multi-omics analysis identifies lipid metabolism biomarkers in ONFH and reveals therapeutic potential of retinoic acid.

Chuan Wang, Chaode Cen, Huachuan Su, Yuhui Peng, Tao Wang, Jian Li, Fei Zhang, Wuxun Peng

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Chuan Wang *Department of Orthopedics, Affiliated Hospital of Guizhou Medical University, Guiyang, 550001, Guizhou, China.
Chaode Cen *Department of Orthopedics, The Beijing Jishuitan Hospital Guizhou Hospital, Guiyang, 550014, Guizhou, China.
Huachuan Su *Internal Medicine, Luodian of Hospital of Traditional Chinese Medicine, Qiannan, 550100, Guizhou, China.
Yuhui PengKey Laboratory of Endemic and Ethnic Diseases, Ministry of Education & Key Laboratory of Medical Molecular Biology of Guizhou Province, School of Basic Medical Science, Guizhou Medical University, Guiyang, 550004, Guizhou, China.
Tao WangDepartment of Orthopedics, Affiliated Hospital of Guizhou Medical University, Guiyang, 550001, Guizhou, China.
Jian LiDepartment of Orthopedics, The Beijing Jishuitan Hospital Guizhou Hospital, Guiyang, 550014, Guizhou, China.
Fei ZhangEmergency Surgery, Affiliated Hospital of Guizhou Medical University, Guiyang, 550001, Guizhou, China. 1426287482@qq.com.
Wuxun PengEmergency Surgery, Affiliated Hospital of Guizhou Medical University, Guiyang, 550001, Guizhou, China. GZMU2022@126.com.

Funding

Cultivation Project of National Natural Science Foundation of Guizhou Medical University 21NSFCP08Science foundation of Guizhou Provincial Health Commission gzwkj2023-177
6 · The paper itself

Abstract

Osteonecrosis of the femoral head (ONFH) is a debilitating condition frequently associated with dysregulation in lipid metabolism. The objective of this study was to identify potential biomarkers for ONFH through various analytical methods and experimental verification, thereby providing a robust reference for disease treatment. Utilizing public datasets, differential analysis was conducted and integrated with weighted gene co-expression network analysis to pinpoint key genes. Subsequently, biomarkers related to lipid metabolism in ONFH were identified by combining machine learning techniques with receiver operating characteristic curves. Furthermore, based on these biomarkers, a nomogram model was developed for diagnostic prediction. Immune infiltration was assessed, and drug predictions involved molecular docking studies. Finally, the relationship between biomarkers and immune cells was investigated through single-cell analysis. Then the system experiment is carried out to verify. Thirty key genes were identified, primarily enriched in "phospholipid metabolic processes" and "lysosome". A total of three biomarkers-CREBBP, GLB1, and PSAP-were recognized as exhibiting strong diagnostic efficacy. The nomogram incorporating these biomarkers demonstrated accurate predictive capabilities. Immune infiltration analysis revealed altered levels of neutrophils and activated dendritic cells in ONFH that correlated with biomarker expression. Additionally, molecular docking studies indicated stable interactions between the identified biomarkers and potential therapeutic agents such as estradiol and retinoic acid. Single-cell sequencing analysis uncovered significant differences in biomarker expression across various immune cell types including T cells. Finally, it was verified that retinoic acid improved ONFH by hsa-miR-320a/GLB1 in vitro and in vivo. This study identifies CREBBP, GLB1, and PSAP as promising biomarkers for ONFH while underscoring their potential roles in lipid metabolism and immune modulation. Moreover, we confirmed the important conclusion that retinoic acid improves ONFH through hsa-miR-320a/GLB1. Future investigations into the therapeutic implications of these findings may offer new avenues for ONFH management.

Indexed as

Femur Head NecrosisLipid MetabolismMultiomicsTretinoinAnimalsBiomarkersFemur HeadGene Expression RegulationHumansMicroRNAsOsteonecrosisRatsRats, Sprague-DawleyRNA, MessengerSingle-Cell Gene Expression AnalysisBiomarkersMicroRNAsRNA, MessengerTretinoinBiomarkersLipid metabolismOsteonecrosis of the femoral headSingle-cell RNA transcriptome

Identifiers

PMID40841396
PMCPMC12371116

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.