Evidence map›Paper›PMID 40841366›Full record

ArticleNature communications2025

The Escherichia coli replication initiator DnaA is titrated on the chromosome.

Lorenzo Olivi, Stephan Köstlbacher, Christina Ludwig, Mees Langendoen, Nico J Claassens, Thijs J G Ettema, John van der Oost, Pieter Rein Ten Wolde, Johannes Hohlbein, Raymond H J Staals

Abstract read
In one paragraph

Article in Nature communications, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Lorenzo OliviLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands. lorenzo.olivi@wur.nl.ORCID http://orcid.org/0000-0002-0166-3450
Stephan KöstlbacherLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.ORCID http://orcid.org/0000-0001-6710-7572
Christina LudwigBavarian Center for Biomolecular Mass Spectrometry (BayBioMS), School of Life Sciences, Technical University of Munich, Munich, Germany.ORCID http://orcid.org/0000-0002-6131-7322
Mees LangendoenLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.
Nico J ClaassensLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.ORCID http://orcid.org/0000-0003-1593-0377
Thijs J G EttemaLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.ORCID http://orcid.org/0000-0002-6898-6377
John van der OostLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands.ORCID http://orcid.org/0000-0001-5024-1871
Pieter Rein Ten WoldeBiochemical Networks Group, Institute AMOLF, Amsterdam, Netherlands.ORCID http://orcid.org/0000-0001-9933-4016
Johannes HohlbeinLaboratory of Biophysics, Wageningen University & Research, Wageningen, Netherlands. johannes.hohlbein@wur.nl.ORCID http://orcid.org/0000-0001-7436-2221
Raymond H J StaalsLaboratory of Microbiology, Wageningen University & Research, Wageningen, Netherlands. raymond.staals@wur.nl.ORCID http://orcid.org/0000-0002-5741-9457

Funding

Deutsche Forschungsgemeinschaft (German Research Foundation) INST 95/1435-1 FUGGEC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 817834Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) 024.003.019Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) VI.C.192.016Nederlandse Organisatie voor Wetenschappelijk Onderzoek (Netherlands Organisation for Scientific Research) VI.Vidi.203.074Volkswagen Foundation (VolkswagenStiftung) 96725
6 · The paper itself

Abstract

DNA replication initiation is orchestrated in bacteria by the replication initiator DnaA. Two models for regulation of DnaA activity in Escherichia coli have been proposed: the switch between an active and inactive form, and the titration of DnaA on the chromosome. Although proposed decades ago, experimental evidence of a titration-based control mechanism is still lacking. Here, we first identified a conserved high-density region of binding motifs near the origin of replication, an advantageous trait for titration of DnaA. We then investigated the mobility of DnaA by visualising single proteins inside single cells of wild-type and deletion mutants E. coli strains, while monitoring cellular size and DNA content. Our results indicate that the chromosome of E. coli controls the free amount of DnaA in a growth rate-dependent fashion. Moreover, they address long-standing questions on the relevance of DnaA titration in stabilising DNA replication by preventing re-initiation events during slow growth.

Indexed as

Bacterial ProteinsChromosomes, BacterialDNA-Binding ProteinsDNA ReplicationEscherichia coliEscherichia coli ProteinsDNA, BacterialReplication OriginBacterial ProteinsDnaA protein, BacteriaDNA, BacterialDNA-Binding ProteinsEscherichia coli Proteins

Identifiers

PMID40841366
PMCPMC12371093

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.