Evidence map›Paper›PMID 40839432›Full record

ArticleSTAR protocols2025

Protocol for mouse brain tissue processing and downstream analysis of circRNA-protein interactions in vivo.

Marta Sztachera, Weronika Wendlandt-Stanek, Monika Piwecka

Abstract read
In one paragraph

Article in STAR protocols, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marta SztacheraDepartment of Non-coding RNAs, Institute of Bioorganic Chemistry of the Polish Academy of Sciences, 61-704 Poznan, Poland. Electronic address: msztachera@ibch.poznan.pl.
Weronika Wendlandt-StanekDepartment of Non-coding RNAs, Institute of Bioorganic Chemistry of the Polish Academy of Sciences, 61-704 Poznan, Poland.
Monika PiweckaDepartment of Non-coding RNAs, Institute of Bioorganic Chemistry of the Polish Academy of Sciences, 61-704 Poznan, Poland. Electronic address: mpiwecka@ibch.poznan.pl.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Exploring RNA-protein interactions is crucial for understanding the operational modes of both constituents of RNA-protein complexes. Here, we present a protocol for brain tissue processing and its application in studying circular RNA (circRNA)-protein interactions. We describe steps for cryogenic biopulverization of the tissue and UV irradiation, followed by a circRNA pull-down protocol. The circRNA pull-down procedure described here represents a novel approach for exploring the circRNA interactome in vivo. For complete details on the use and execution of this protocol, please refer to Sztachera et al.

Indexed as

BrainRNA-Binding ProteinsRNA, CircularAnimalsMiceUltraviolet RaysRNA-Binding ProteinsRNA, CircularMolecular BiologyMolecular/Chemical ProbesNeuroscienceProtein Biochemistry

Identifiers

PMID40839432
PMCPMC12491525

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.