Evidence map›Paper›PMID 40838983›Full record

ArticleDevelopment (Cambridge, England)2025

Pervasive homeobox gene function in the male-specific nervous system of Caenorhabditis elegans.

Robert W Fernandez, Angelo J Digirolamo, Giulio Valperga, G Robert Aguilar, Laura Molina-García, Rinn M Kersh, Chen Wang, Karinna Pe, Yasmin H Ramadan, Curtis Loer and 2 more

Abstract read
In one paragraph

Article in Development (Cambridge, England), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors.

Robert W FernandezDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Angelo J DigirolamoDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Giulio ValpergaDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
G Robert AguilarDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Laura Molina-GarcíaDepartment of Cell and Developmental Biology, University College London, London WC1E 6BT, UK.
Rinn M KershDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Chen WangDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Karinna PeDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Yasmin H RamadanDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.
Curtis LoerUniversity of San Diego, Department of Biology, San Diego, CA 92110, USA.
Arantza BarriosDepartment of Cell and Developmental Biology, University College London, London WC1E 6BT, UK.
Oliver HobertDepartment of Biological Sciences, Columbia University, Howard Hughes Medical Institute, 1212 Amsterdam Avenue, New York, NY 10025, USA.ORCID 0000-0002-7634-2854

Funding

LIM HOMEOBOX GENE LIM-6 IN MOTOR NEURON DIFFERENTIATIONR01NS039996 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Oliver Hobert · 2001 to 2026
$6.8M
Regulatory Architecture of Glia Cell Type Diversity in C. ElegansR01NS137594 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Oliver Hobert · 2024 to 2026
$1.2M
Columbia UniversityEuropean Molecular Biology Organization ALTF 195-2022Howard Hughes Medical InstituteNIH HHS R01NS039996NIH HHS R01NS137594NINDS NIH HHS R01 NS039996NINDS NIH HHS R01 NS137594Simons Foundation
6 · The paper itself

Abstract

We explore here how neuronal cell type diversity is genetically delineated in the context of the large, but poorly studied, male-specific nervous system of the nematode Caenorhabditis elegans. Mostly during postembryonic development, the C. elegans male adds 93 male-specific neurons, falling into 25 cardinal classes, to the predominantly embryonically generated, sex-shared nervous system, comprising 294 neurons (116 cardinal classes). Using engineered reporter alleles, we investigate here the expression pattern of 40 of the 80 phylogenetically conserved C. elegans homeodomain proteins within the male-specific nervous system. Our analysis indicates that each individual neuron class is defined by unique combinations of homeodomain proteins and that the male-specific nervous system can be subdivided along the anterior/posterior axis in HOX cluster expression domains. Using a collection of newly available terminal fate markers, we undertake a mutant analysis of five homeobox genes (unc-30/Pitx, unc-42/Prop, lim-6/Lmx, lin-11/Lhx, ttx-1/Otx) and identify defects in cell fate specification and/or male copulatory defects in each of these mutant strains. Our analysis expands our understanding of the importance of homeobox genes in nervous system development and function.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsGenes, HomeoboxHomeodomain ProteinsNervous SystemAnimalsGene Expression Regulation, DevelopmentalMaleMutationNeuronsCaenorhabditis elegans ProteinsHomeodomain ProteinsC. elegansHomeobox geneNeuronal differentiationSexual differentiation

Identifiers

PMID40838983
PMCPMC12949664

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.