Evidence map›Paper›PMID 40838837›Full record

ArticleProtein science : a publication of the Protein Society2025

A β-1,2-glucan-associated glycoside hydrolase family 1 β-glucosidase from Streptomyces griseus.

Haruto Kumakura, Sei Motouchi, Kaito Kobayashi, Miyu Inoue, Natsuki Kariuda, Hiroyuki Nakai, Masahiro Nakajima

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Haruto KumakuraDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.
Sei MotouchiDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.
Kaito KobayashiArtificial Intelligence Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Tokyo, Japan.
Miyu InoueDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.
Natsuki KariudaDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.
Hiroyuki NakaiFaculty of Agriculture, Niigata University, Niigata, Japan.
Masahiro NakajimaDepartment of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, Noda, Japan.ORCID 0000-0002-3182-0859

Funding

Japan Society for the Promotion of Science 20K05830JST SPRING JPMJSP2151
6 · The paper itself

Abstract

β-Glucosidases, major enzymes that release glucose from various natural compounds, are phylogenetically classified into glycoside hydrolase (GH) families. GH1 is the largest of these families. No β-1,2-glucan-associated GH1 enzyme has been found, even though β-1,2-glucans are natural carbohydrates that are important for interaction between organisms and environmental adaptation. In this study, functional and structural analyses of a GH1 enzyme from Streptomyces griseus (SGR_2426 protein) were performed. SGR_2426 showed the highest hydrolytic activity toward p-nitrophenyl β-glucopyranoside among p-nitrophenyl sugars. This enzyme showed hydrolytic activity toward β-1,2-glucooligosaccharides specifically among β-linked glucooligosaccharides. A structure of the enzyme in complex with sophorose (β-1,2-glucodisaccharide) was obtained as a Michaelis complex. The six-membered ring of the glucose unit at the reducing end of sophorose is positioned in a hydrophobic environment between Trp291 and Met171, while only residue Gln229 forms a hydrogen bond directly. Trp291 and Gln229 are proposed as candidates for the residues important for substrate specificity based on comparison with structurally characterized GH1 homologs. Mutational analysis of Trp291 and Gln229 suggested that Trp291 is important for substrate recognition but not for substrate specificity and that Gln229 is involved in substrate specificity. SGR_2426 is the first identified β-1,2-glucan-associated β-glucosidase in the GH1 family.

Indexed as

Bacterial Proteinsbeta-Glucansbeta-GlucosidaseStreptomyces griseusHydrolysisModels, MolecularSubstrate SpecificityBacterial Proteinsbeta-Glucansbeta-Glucosidaseglycoside glycosidaseβ‐1,2‐glucanβ‐1,2‐glucanaseβ‐1,2‐glucooligosaccharideβ‐glucosidase

Identifiers

PMID40838837
PMCPMC12369401

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.