Evidence map›Paper›PMID 40837538›Full record

ArticleEcology and evolution2025

Genomics Reveals Distinct Evolutionary Lineages in Asian Elephants.

Jeroen Kappelhof, Emma Diepeveen, Martijn F L Derks, Ole Madsen, Rebekah Rogers, Benoit Goossens, Reeta Sharma, Martien A M Groenen, Jack J Windig, Mirte Bosse

Abstract read
In one paragraph

Article in Ecology and evolution, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jeroen KappelhofAnimal Breeding and Genomics Wageningen University and Research Wageningen the Netherlands.ORCID https://orcid.org/0000-0002-3668-3953
Emma DiepeveenA-LIFE, Section Ecology & Evolution Vrije Universiteit Amsterdam Amsterdam the Netherlands.
Martijn F L DerksAnimal Breeding and Genomics Wageningen University and Research Wageningen the Netherlands.
Ole MadsenAnimal Breeding and Genomics Wageningen University and Research Wageningen the Netherlands.
Rebekah RogersDepartment of Bioinformatics and Genomics University of North Carolina Charlotte North Carolina USA.
Benoit GoossensDanau Girang Field Centre C/o Sabah Wildlife Department Kota Kinabalu Sabah Malaysia.
Reeta SharmaRoyal Rotterdam Zoological & Botanical Gardens Rotterdam the Netherlands.
Martien A M GroenenAnimal Breeding and Genomics Wageningen University and Research Wageningen the Netherlands.
Jack J WindigAnimal Breeding and Genomics Wageningen University and Research Wageningen the Netherlands.
Mirte BosseAnimal Breeding and Genomics Wageningen University and Research Wageningen the Netherlands.

Funding

New Genes and AdaptionR35GM133376 · NIGMS · UNIVERSITY OF NORTH CAROLINA CHARLOTTE · PI Rebekah Lee Rogers · 2019 to 2026
$2.4M
NIGMS NIH HHS R35 GM133376
6 · The paper itself

Abstract

This study introduces, for the first time, whole-genome sequencing (WGS) data from predominantly wild-born Asian elephants currently housed in European zoos, covering the distribution range of Asian elephants. With this WGS data, we aim to validate the current designation of Asian elephant subspecies and address currently discussed ambiguities about their origin, particularly concerning Bornean and Sri Lankan elephants by analyzing population structure, determining divergence times, and exploring ancient and recent bottlenecks. Understanding the evolutionary history of the Asian elephant subspecies is essential for developing targeted conservation strategies and mitigating risks to their survival. Analysis reveals a clear population structure with relatively recent splits, delineating three distinct genetic clusters: Borneo, Sumatra, and Asian Mainland, with Sri Lanka forming an additional group. We estimated the divergence time between Bornean and Sumatran elephants to be around 170,000 years ago. The divergence of the Sri Lankan elephant from the Mainland is estimated to have occurred around 48,000 years ago, with Sri Lankan elephants predominantly clustering with those from Myanmar, possibly due to historical trade networks. The genome of the Bornean elephant exhibited signatures of severe bottlenecks as recently as 8 and 38 generations ago, further supporting hypotheses of their introduction. Our data reflect the current Asian elephant subspecies designation. Additionally, for the first time, the Sumatra elephant is confirmed as a distinct subspecies with genomic data. Furthermore, the study discusses genetic management strategies for ex-situ populations, emphasizing the importance of implementing cluster-specific conservation measures.

Identifiers

PMID40837538
PMCPMC12361634

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.