Evidence map›Paper›PMID 40837468›Full record

ArticleData in brief2025

Targeted lipidomics dataset of central nervous system and plasma from mice with experimental autoimmune encephalomyelitis.

Jörn Lötsch, Irmgard Tegder, Natasja de Bruin, Dominique Thomas, Gerd Geisslinger

Abstract read
In one paragraph

Article in Data in brief, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jörn LötschGoethe University, Institute of Clinical Pharmacology, Faculty of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany.
Irmgard TegderGoethe University, Institute of Clinical Pharmacology, Faculty of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany.
Natasja de BruinFraunhofer Institute for Translational Medicine and Pharmacology (ITMP), Theodor-Stern-Kai 7, 60596 Frankfurt am Main, Germany.
Dominique ThomasGoethe University, Institute of Clinical Pharmacology, Faculty of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany.
Gerd GeisslingerGoethe University, Institute of Clinical Pharmacology, Faculty of Medicine, Theodor-Stern-Kai 7, 60590 Frankfurt am Main, Germany.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This dataset was generated from a preclinical study that used the relapsing-remitting experimental autoimmune encephalomyelitis (EAE) model in SJL/J mice to examine lipid signalling in neuroinflammation. The study examined how the reference compounds FTY720 (fingolimod, 0.5 mg/kg/day) affected the autotaxin/lysophosphatidic acid (ATX/LPA) axis and related lipid mediators. The mice were divided into three groups: control (no EAE), EAE, and EAE plus fingolimod. Tissue samples were collected from the plasma, cerebellum, hippocampus, and prefrontal cortex, resulting in 26 biological samples. Targeted lipidomics was performed using liquid chromatography-tandem mass spectrometry (LC-MS/MS) to quantify 62 lipid species, including lysophosphatidic acids, ceramides, sphingoid bases, and endocannabinoids. The dataset is provided in both raw and imputed formats, along with comprehensive sample-level metadata. The data are organized into three comma-separated values (CSV) files: (1) the original quantitative lipidomics data matrix with missing values, (2) a log₁₀-transformed imputed dataset with missing values addressed using random forest imputation, and (3) a metadata file detailing the characteristics of the samples, group assignments, and tissue type. Standardized variable naming and detailed metadata facilitate cross-referencing and integration with other datasets. This resource enables comparative analyses of lipid profiles across tissues and treatment groups. It supports statistical and machine learning applications and enables the evaluation of data augmentation strategies, including statistical and generative AI approaches. This dataset can be reused in studies of neuroinflammation, lipid signalling, and biomarker discovery, as well as in the development of methods for computational biology and omics data analysis.

Indexed as

Data scienceLipidomicsMachine learningMouse modelMultiple sclerosisPreclinical pharmacology

Identifiers

PMID40837468
PMCPMC12361624

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.