Evidence map›Paper›PMID 40836431›Full record

ArticleNano letters2025

Direct Visualization of ATP-Binding Cassette Protein A1 Mediated Nascent High-Density Lipoprotein Biogenesis by High-Speed Atomic Force Microscopy.

Atsushi Kodan, Romain Amyot, Kenichi Umeda, Fumihiko Ogasawara, Yasuhisa Kimura, Noriyuki Kodera, Kazumitsu Ueda

Abstract read
In one paragraph

Article in Nano letters, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Atsushi KodanInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0003-0317-9109
Romain AmyotNano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.ORCID 0000-0002-3316-8462
Kenichi UmedaNano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.ORCID 0000-0002-3650-3828
Fumihiko OgasawaraInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Kyoto 606-8501, Japan.
Yasuhisa KimuraDivision of Applied Life Sciences, Graduate School of Agriculture, Kyoto University, Kyoto 606-8502, Japan.
Noriyuki KoderaNano Life Science Institute (WPI-NanoLSI), Kanazawa University, Kakuma-machi, Kanazawa 920-1192, Japan.ORCID 0000-0003-4880-8423
Kazumitsu UedaInstitute for Integrated Cell-Material Sciences (WPI-iCeMS), Kyoto University, Kyoto 606-8501, Japan.

Funding

CREST-JSTJSPS KAKENHI
6 · The paper itself

Abstract

The ATP-binding cassette protein A1 (ABCA1) is crucial for high-density lipoprotein (HDL) formation, maintaining cholesterol homeostasis. However, the mechanism of ABCA1-mediated HDL formation remains unclear. Here, we reconstituted this process and directly visualized it using high-speed atomic force microscopy by employing a novel linker-based immobilization strategy for side-view imaging of ABCA1 nanodiscs. Our data revealed an approximately 1.6-fold volumetric expansion of the ABCA1 extracellular domain (ECD), coupled with a contraction of the ABCA1-embedded nanodisc, suggesting ATP-dependent transfer of over 300 lipids to the ECD for transient storage. Subsequent addition of apolipoprotein A-I, a major HDL protein, allowed ABCA1 to facilitate nascent HDL particle formation, as it does at the cell membrane. Notably, this study provides the first direct observation of a single ABC protein executing its unique functional cycle with submolecular spatial and subsecond temporal resolution, offering critical insights into "HDL biogenesis", with potential implications for ABCA1-targeted therapeutics for dyslipidemia.

Indexed as

ATP Binding Cassette Transporter 1Lipoproteins, HDLMicroscopy, Atomic ForceAdenosine TriphosphateApolipoprotein A-IHumansABCA1 protein, humanAdenosine TriphosphateApolipoprotein A-IATP Binding Cassette Transporter 1Lipoproteins, HDLABCA1apoA-Ihigh-speed AFMmolecular mechanismnascent HDL

Identifiers

PMID40836431
PMCPMC12435776

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.