Evidence map›Paper›PMID 40835665›Full record

ArticleScientific reports2025

Machine learning model for early diagnosis of breast cancer based on PiRNA expression with CA153.

Limin Niu, Weicheng Zhou, Xiao Li, Jinming Zhao, Lei Li, Xingguo Song

Abstract read
In one paragraph

Article in Scientific reports, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Limin NiuDepartment of Clinical Laboratory, Shandong Cancer Hospital and Institute, Shandong First Medical University, Shandong Academy of Medical Sciences, Jiyan Road 440#, Jinan, 250117, Shandong, PR China.
Weicheng ZhouCore & Molecular Lab (CML), Roche Diagnostics (Shanghai) Limited, Shanghai, PR China.
Xiao LiDepartment of Clinical Laboratory, Shandong Cancer Hospital and Institute, Shandong First Medical University, Shandong Academy of Medical Sciences, Jiyan Road 440#, Jinan, 250117, Shandong, PR China.
Jinming ZhaoDepartment of Clinical Laboratory, Shandong Cancer Hospital and Institute, Shandong First Medical University, Shandong Academy of Medical Sciences, Jiyan Road 440#, Jinan, 250117, Shandong, PR China.
Lei LiDepartment of Clinical Laboratory, Shandong Cancer Hospital and Institute, Shandong First Medical University, Shandong Academy of Medical Sciences, Jiyan Road 440#, Jinan, 250117, Shandong, PR China.
Xingguo SongDepartment of Clinical Laboratory, Shandong Cancer Hospital and Institute, Shandong First Medical University, Shandong Academy of Medical Sciences, Jiyan Road 440#, Jinan, 250117, Shandong, PR China. xgsong@sdfmu.edu.cn.

Funding

Collaborative Academic Innovation Project of Shandong Cancer Hospital TS-010Shandong Natural Science Foundation Innovation and Development Joint Fund ZR2023LZL011Shandong Traditional Chinese Medicine Technology Project M2023-013Taishan Youth Scholar Program of Shandong Province tsqn202312366
6 · The paper itself

Abstract

PIWI-interacting RNAs (piRNAs) have been implicated in the biological processes of various cancers. This study aimed to investigate the diagnostic potential of circulating piRNAs in breast cancer (BC) using machine learning (ML) frameworks. A serum tri-piRNA signature (piR-139966, piR-2572505, piR-2570061) was selected via piRNA sequencing, validated by qPCR, and then analyzed in combination with related clinical factors. Predictive ML models for early diagnosis of BC combining piRNA expression with CA153 were constructed using 10 ML algorithms and evaluated by 8 performance metrics. Serum levels of piR-139966, piR-2572505, and piR-2570061 were significantly upregulated in early-stage BC patients compared to matched healthy controls. This tri-piRNA panel demonstrated enhanced diagnostic precision for BC detection and exhibited complementary value to CA153 measurements, whether used alone or combined. Through systematic ML optimization, we developed a stratified diagnostic model where XGBoost algorithm showed optimal performance in both training and validation cohorts for early-stage BC identification. With XGBoost algorithms applied to piRNA expression along with CA153, we developed and validated a predictive ML model with superior diagnostic accuracy compared to conventional approaches.

Indexed as

Breast NeoplasmsEarly Detection of CancerMachine LearningRNA, Small InterferingAdultAlgorithmsBiomarkers, TumorFemaleGene Expression Regulation, NeoplasticHumansMiddle AgedPiwi-Interacting RNABiomarkers, TumorPiwi-Interacting RNARNA, Small InterferingBreast cancerEarly diagnosisMachine learning modelPIWI-interacting RNAs (piRNAs)XGBoost algorithms

Identifiers

PMID40835665
PMCPMC12368194

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.