Evidence map›Paper›PMID 40835008›Full record

ArticleThe Journal of biological chemistry2025

Class I histone deacetylases catalyze lysine lactylation.

Michelangelo B Gonzatti, Jordi C J Hintzen, Isha Sharma, Mohd Altaf Najar, Takeshi Tsusaka, Mariola M Marcinkiewicz, Claudia Veronica Da Silva Crispim, Nathaniel W Snyder, George M Burslem, Emily L Goldberg

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. Review
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  3. Lactate-Mediated Lysine Lactylation in Renal Fibrosis: Current Progress and Challenges.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2026
    Review
  4. Review
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  6. Histone deacetylases in cancer metabolic reprogramming.Experimental & molecular medicine · 2026
    Review
  7. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Michelangelo B GonzattiDepartment of Physiology, University of California, San Francisco, San Francisco, California, USA.
Jordi C J HintzenDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Isha SharmaDepartment of Physiology, University of California, San Francisco, San Francisco, California, USA.
Mohd Altaf NajarDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Takeshi TsusakaDepartment of Physiology, University of California, San Francisco, San Francisco, California, USA.
Mariola M MarcinkiewiczAging and Cardiovascular Discovery Center, Department of Cardiovascular Sciences, Lewis Katz School of Medicine, Temple University, Philadelphia, Pennsylvania, USA.
Claudia Veronica Da Silva CrispimAging and Cardiovascular Discovery Center, Department of Cardiovascular Sciences, Lewis Katz School of Medicine, Temple University, Philadelphia, Pennsylvania, USA.
Nathaniel W SnyderAging and Cardiovascular Discovery Center, Department of Cardiovascular Sciences, Lewis Katz School of Medicine, Temple University, Philadelphia, Pennsylvania, USA.
George M BurslemDepartment of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA; Department of Cancer Biology and Epigenetics Institute, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA. Electronic address: George.Burslem@pennmedicine.upenn.edu.
Emily L GoldbergDepartment of Physiology, University of California, San Francisco, San Francisco, California, USA; Chan-Zuckerberg Biohub, San Francisco, California, USA. Electronic address: Emily.goldberg@ucsf.edu.

Funding

Editing Acetylation and Protein HomeostasisR35GM142505 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI George Burslem · 2021 to 2026
$2.7M
Relevance of fatty acid handling in the adaptive response to mitochondrial dysfunctionR01DK138011 · NIDDK · THOMAS JEFFERSON UNIVERSITY · PI Erin Seifert, Nathaniel W. Snyder · 2024 to 2026
$1.6M
NIDDK NIH HHS R01 DK138011NIGMS NIH HHS R35 GM142505
6 · The paper itself

Abstract

Metabolism and post-translational modifications (PTMs) are intrinsically linked, and the number of identified metabolites that can covalently modify proteins continues to increase. This metabolism/PTM crosstalk is especially true for lactate, the product of anaerobic metabolism following glycolysis. Lactate forms an amide bond with the ε-amino group of lysine, a modification known as lysine lactylation or Kla. Multiple independent mechanisms have been proposed in the formation of Kla, including p300/CBP-dependent transfer from lactyl-CoA, a reactive intermediate lactoylglutathione species that non-enzymatically lactylates proteins, and several enzymes are reported to have lactyl transferase capability. We recently discovered that class I histone deacetylases (HDACs) 1, 2, and 3 can all reverse their canonical chemical reaction to catalyze lysine β-hydroxybutyrylation. Here we tested the hypothesis that HDACs can also catalyze Kla formation. Using biochemical, pharmacological, and genetic approaches, we found that HDACs are sufficient to catalyze Kla formation and that HDACs are a major driver of lysine lactylation. Dialysis experiments confirm this is a reversible reaction that depends on lactate concentration. We also directly quantified intracellular lactyl-CoA and found that Kla abundance can be uncoupled from lactyl-CoA levels. Therefore, we propose a model in which the majority of Kla is formed through enzymatic addition of lactate by HDACs 1, 2, and 3.

Indexed as

Histone DeacetylasesLactic AcidLysineProtein Processing, Post-TranslationalAcyl Coenzyme AHumansAcyl Coenzyme AHistone DeacetylasesLactic AcidLysineglycolysishistone deacetylase (HDAC)lactatelactic acidlysine lactylationmacrophagepost-translational modification (PTM)protein acylation

Identifiers

PMID40835008
PMCPMC12624779

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.