Evidence map›Paper›PMID 40834854›Full record

ArticleCell reports. Medicine2025

AI-driven multimodal algorithm predicts immunotherapy and targeted therapy outcomes in clear cell renal cell carcinoma.

Danil Stupichev, Natalia Miheecheva, Ekaterina Postovalova, Yang Lyu, Akshaya Ramachandran, Ilya Galkin, Gleb Khegai, Kristina Perevoshchikova, Anna Love, Sofia Menshikova and 10 more

Abstract read
In one paragraph

Article in Cell reports. Medicine, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Danil StupichevBostonGene Corporation, Waltham, MA 02453, USA.
Natalia MiheechevaBostonGene Corporation, Waltham, MA 02453, USA.
Ekaterina PostovalovaBostonGene Corporation, Waltham, MA 02453, USA.
Yang LyuDepartment of Medicine, Washington University, St. Louis, MO 63110, USA.
Akshaya RamachandranDepartment of Medicine, Washington University, St. Louis, MO 63110, USA.
Ilya GalkinBostonGene Corporation, Waltham, MA 02453, USA.
Gleb KhegaiBostonGene Corporation, Waltham, MA 02453, USA.
Kristina PerevoshchikovaBostonGene Corporation, Waltham, MA 02453, USA.
Anna LoveBostonGene Corporation, Waltham, MA 02453, USA.
Sofia MenshikovaBostonGene Corporation, Waltham, MA 02453, USA.
Artem TarasovBostonGene Corporation, Waltham, MA 02453, USA.
Viktor SvekolkinBostonGene Corporation, Waltham, MA 02453, USA.
Maria BruttanBostonGene Corporation, Waltham, MA 02453, USA.
Arina VarlamovaBostonGene Corporation, Waltham, MA 02453, USA.
Kirill KriukovBostonGene Corporation, Waltham, MA 02453, USA.
Ravshan AtaullakhanovBostonGene Corporation, Waltham, MA 02453, USA.
Nathan FowlerBostonGene Corporation, Waltham, MA 02453, USA.
Emily ChengHuman Oncology and Pathogenesis Program and Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Alexander BagaevBostonGene Corporation, Waltham, MA 02453, USA. Electronic address: aleksander.bagaev@bostongene.com.
James J HsiehDepartment of Medicine, Washington University, St. Louis, MO 63110, USA. Electronic address: jhsieh@wustl.edu.

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
NCI NIH HHS P30 CA008748
6 · The paper itself

Abstract

Treatment for metastatic clear cell renal cell carcinoma (ccRCC) has dramatically advanced with tyrosine kinase inhibitor (TKI) and immune checkpoint inhibitor (ICI) administration. However, most patients eventually succumb to their disease, and toxicities associated with individual treatment modalities are significant. Multiple single-modality transcriptomic signatures have been developed to predict treatment response, yielding insightful yet inconsistent results when applied to independent cohorts. By unifying transcriptomic data from 14 cohorts (total n = 3,621), we present harmonized immune tumor microenvironment (HiTME) ccRCC subtypes validated with spatial proteomics. This AI-based multimodal approach integrates genomic, transcriptomic, and tumor microenvironment (TME) features for ICI and TKI therapy response prediction.

Indexed as

AlgorithmsCarcinoma, Renal CellImmunotherapyKidney NeoplasmsMolecular Targeted TherapyHumansImmune Checkpoint InhibitorsProtein Kinase InhibitorsTranscriptomeTreatment OutcomeTumor MicroenvironmentImmune Checkpoint InhibitorsProtein Kinase Inhibitorsartificial intelligence-based predictive modelingclear cell renal cell carcinomaimmune checkpoint inhibitorsmultiplex immunofluorescencepredictive biomarkerssingle-cell proteogenomicsspatial heterogeneitytumor heterogeneitytumor microenvironmenttyrosine kinase inhibitors

Identifiers

PMID40834854
PMCPMC12432380

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.