Evidence map›Paper›PMID 40834404›Full record

ArticleJMIR public health and surveillance2025

A Cloud-Based Platform for Harmonized COVID-19 Data: Design and Implementation of the Rapid Acceleration of Diagnostics (RADx) Data Hub.

Marcos Martínez-Romero, Matthew Horridge, Nilesh Mistry, Aubrie Weyhmiller, Jimmy K Yu, Alissa Fujimoto, Aria Henry, Martin J O'Connor, Ashley Sier, Stephanie Suber and 8 more

Abstract read
In one paragraph

Article in JMIR public health and surveillance, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Marcos Martínez-RomeroStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0000-0002-9814-3258
Matthew HorridgeStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0000-0001-8921-6593
Nilesh MistryBooz Allen Hamilton Inc., McLean, VA, United States.ORCID 0009-0004-2301-7494
Aubrie WeyhmillerUniversity of North Carolina at Chapel Hill, Renaissance Computing Institute (RENCI), Chapel Hill, NC, United States.ORCID 0000-0001-6735-1540
Jimmy K YuStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0000-0001-8536-4038
Alissa FujimotoBooz Allen Hamilton Inc., McLean, VA, United States.ORCID 0009-0006-9287-9244
Aria HenryUniversity of North Carolina at Chapel Hill, Renaissance Computing Institute (RENCI), Chapel Hill, NC, United States.ORCID 0009-0009-9956-8213
Martin J O'ConnorStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0000-0002-2256-2421
Ashley SierBooz Allen Hamilton Inc., McLean, VA, United States.ORCID 0000-0002-2661-1534
Stephanie SuberUniversity of North Carolina at Chapel Hill, Renaissance Computing Institute (RENCI), Chapel Hill, NC, United States.ORCID 0009-0002-8157-1421
Mete U AkdoganStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0000-0003-1520-1481
Yan CaoStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0009-0009-4882-6446
Somu ValliappanBooz Allen Hamilton Inc., McLean, VA, United States.ORCID 0009-0002-6441-2699
Joanna O MieczkowskaUniversity of North Carolina at Chapel Hill, Renaissance Computing Institute (RENCI), Chapel Hill, NC, United States.ORCID 0000-0002-6482-336X
Ashok KrishnamurthyUniversity of North Carolina at Chapel Hill, Renaissance Computing Institute (RENCI), Chapel Hill, NC, United States.ORCID 0000-0002-3215-7622
Michael A KellerBooz Allen Hamilton Inc., McLean, VA, United States.ORCID 0009-0004-6688-4491
Mark A MusenStanford University, Stanford Center for Biomedical Informatics Research, Palo Alto, CA, United States.ORCID 0000-0003-3325-793X
RADx Data Hub Teamsee Authors' Contributions section, .

Funding

Enhancing the RADx Data Hub for Data FAIRnessOT2DB000009 · OD · STANFORD UNIVERSITY · PI MUSEN, MARK A · 2022 to 2023
$44.3M
DB NIH HHS OT2 DB000009
6 · The paper itself

Abstract

backgroundThe COVID-19 pandemic exposed significant limitations in existing data infrastructure, particularly the lack of systems for rapidly collecting, integrating, and analyzing data to support timely and evidence-based public health responses. These shortcomings hampered efforts to conduct comprehensive analyses and make rapid, data-driven decisions in response to emerging threats. To overcome these challenges, the US National Institutes of Health launched the Rapid Acceleration of Diagnostics (RADx) initiative. A key component of this initiative is the RADx Data Hub-a centralized, cloud-based platform designed to support data sharing, harmonization, and reuse across multiple COVID-19 research programs and data sources.

objectiveWe aim to present the design, implementation, and capabilities of the RADx Data Hub, a cloud-based platform developed to support findable, accessible, interoperable, reusable (FAIR) data practices and enable secondary analyses of the COVID-19-related data contributed by a nationwide network of researchers.

methodsThe RADx Data Hub was developed on a scalable cloud infrastructure, grounded in the FAIR data principles. The platform integrates heterogeneous data types-including clinical data, diagnostic test results, behavioral data, and social determinants of health-submitted by over 100 research organizations across 46 US states and territories. The data pipeline includes automated and manual processes for deidentification, quality validation, expert curation, and harmonization. Metadata standards are enforced using tools such as the Center for Expanded Data Annotation and Retrieval (CEDAR) Workbench and BioPortal. Data files are structured using a unified specification to support consistent representation and machine-actionable metadata.

resultsAs of May 2025, the RADx Data Hub hosts 187 studies and over 1700 data files, spanning 4 RADx programs: RADx Underserved Populations (RADx-UP), RADx Radical (RADx-rad), RADx Tech, and RADx Digital Health Technologies (RADx DHT). The Study Explorer and Analytics Workbench components enable researchers to discover relevant studies, inspect rich metadata, and conduct analyses within a secure cloud-based environment. Harmonized data conforming to a core set of common data elements facilitate cross-study integration and support secondary use. The platform provides persistent identifiers (digital object identifiers) for each study and supports access to structured metadata that adhere to the CEDAR specification, available in both JSON and YAML formats for seamless integration into computational workflows.

conclusionsThe RADx Data Hub successfully addresses key data integration challenges by providing a centralized, FAIR-compliant platform for public health research. Its adaptable architecture and data management practices are designed to support secondary analyses and can be repurposed for other scientific disciplines, strengthening data infrastructure and enhancing preparedness for future health crises.

Indexed as

Cloud ComputingCOVID-19Information DisseminationHumansPandemicsSARS-CoV-2United Statescloud-based data platformCOVID-19 surveillancedata harmonization and integrationdigital health researchFAIR data sharinghealth disparitiesmetadata standardspandemic response informaticspublic health data infrastructuresecondary data analysis

Identifiers

PMID40834404
PMCPMC12409176

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.