Evidence map›Paper›PMID 40833996›Full record

ArticleHepatology (Baltimore, Md.)2025

Human-induced pluripotent stem cell-based hepatic modeling of lipid metabolism-associated TM6SF2-E167K variant.

Lanuza A P Faccioli, Yiyue Sun, Olamide Animasahun, Takashi Motomura, Zhenghao Liu, Takeshi Kurihara, Zhiping Hu, Bo Yang, Zeliha Cetin, Annalisa M Baratta and 14 more

Abstract read
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Article in Hepatology (Baltimore, Md.), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Autophagy in MASLD: A Metabolic and Precision Medicine Perspective.Liver international : official journal of the International Association for the Study of the Liver · 2026
    Review
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  3. Review
  4. Review
  5. Article
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  8. Frontiers in endocrinology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors.

Lanuza A P FaccioliDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Yiyue SunDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Olamide AnimasahunDepartment of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-4032-3619
Takashi MotomuraDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Zhenghao LiuDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-2748-0775
Takeshi KuriharaDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-3063-9126
Zhiping HuDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Bo YangDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.ORCID 0000-0002-3183-5567
Zeliha CetinDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Annalisa M BarattaDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Ajay ShankaranDepartment of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-0044-2883
Minal NenwaniDepartment of Biomedical Engineering, Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, USA.
Leyla Nurcihan AltayDepartment of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0009-0002-7064-0751
Linqi HuangDepartment of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0002-7915-0989
Noah MeursDepartment of Biomedical Engineering, Biointerfaces Institute, University of Michigan, Ann Arbor, Michigan, USA.ORCID 0000-0001-9729-8832
Jonathan FranksDepartment of Cell Biology and Physiology, Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Donna StolzDepartment of Cell Biology and Physiology, Center for Biologic Imaging, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Dillon C GavlockDrug Discovery Institute, Department of Computational and Systems Biology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Mark T MiedelDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Alina OstrowskaDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Rodrigo M FlorentinoDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Ira J FoxDepartment of Surgery, Children's Hospital of Pittsburgh of UPMC, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.
Deepak NagrathDepartment of Chemical Engineering, University of Michigan, Ann Arbor, Michigan, USA.
Alejandro Soto-GutierrezDepartment of Pathology, University of Pittsburgh, Pittsburgh, Pennsylvania, USA.

Funding

Treating AT Deficiency with Drugs that Modulate the Proteostasis NetworkP01DK096990 · NIDDK · WASHINGTON UNIVERSITY · PI PERLMUTTER, DAVID H · 2012 to 2023
$18.3M
Pittsburgh Liver Research CenterP30DK120531 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Shuchang Silvia Liu · 2019 to 2026
$10.9M
Harnessing human brain and liver microphysiological systems for testing therapeutics for metastatic melanomaU01TR002383 · NCATS · VANDERBILT UNIVERSITY · PI MURPHY, WILLIAM L., TAYLOR, D. LANSING · 2018 to 2022
$7.6M
Human Microphysiology Systems Disease Model of Type 2 Diabetes Starting with Liver and pancreatic IsletsUH3DK119973 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TAYLOR, D. LANSING · 2020 to 2022
$6.7M
Qualification of Patient-Derived Biomimetic Liver MPS as Drug Discovery Tools for Drug Metabolism, Toxicity, Drug Efficacy Testing and Clinical Trial Cohort SelectionU2CTR004863 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Mark E Schurdak · 2024 to 2026
$6.1M
Mini-Livers Derived from Human IPS Cells for Modeling Steatosis and TherapyR01DK099257 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI NAGRATH, DEEPAK, SOTO-GUTIERREZ, ALEJANDRO · 2014 to 2024
$3.4M
Applying a Human Liver Microphysiology System to Develop Therapeutic Strategies for Non-Alcoholic Fatty Liver Disease (NAFLD)R01DK117881 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TAYLOR, D. LANSING · 2018 to 2021
$2.7M
Human Microphysiology Systems Disease Model of Type 2 Diabetes Starting with Liver and pancreatic IsletsUG3DK119973 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TAYLOR, D. LANSING · 2018 to 2019
$2.3M
A vascularized patient-derived iPSC liver acinus microphysiology system as an innovative precision medicine platform for optimizing clinical trial design for nonalcoholic fatty liver diseaseUH3TR003289 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BEHARI, JAIDEEP, SOTO-GUTIERREZ, ALEJANDRO · 2022 to 2024
$2.3M
Implementing A QSP Platform to Predict and Test Drugs for Metabolic Associated Fatty Liver Disease Genetic Variants in an iPSC-cell Based Human Biomimetic Liver Microphysiology SystemR01DK135606 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Mark T. Miedel · 2024 to 2026
$1.9M
A vascularized patient-derived iPSC liver acinus microphysiology system as an innovative precision medicine platform for optimizing clinical trial design for nonalcoholic fatty liver diseaseUG3TR003289 · NCATS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BEHARI, JAIDEEP, SOTO-GUTIERREZ, ALEJANDRO · 2020 to 2021
$1.5M
Opera Phenix High-Content Imaging System for Drug DiscoveryS10OD028450 · OD · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TAYLOR, D. LANSING · 2020 to 2020
$1.0M
NCATS NIH HHS U01 TR002383NCATS NIH HHS U2C TR004863NCATS NIH HHS UG3 TR003289NCATS NIH HHS UH3 TR003289NIDDK NIH HHS P01 DK096990NIDDK NIH HHS P30 DK120531NIDDK NIH HHS R01 DK099257NIDDK NIH HHS R01 DK117881NIDDK NIH HHS R01 DK135606NIDDK NIH HHS UG3 DK119973NIDDK NIH HHS UH3 DK119973NIH HHS S10 OD028450
6 · The paper itself

Abstract

BACKGROUND AND

aimsTM6SF2 rs58542926 (E167K) is related to an increased prevalence of metabolic dysfunction-associated steatotic liver disease. Conflicting mouse study results highlight the need for a human model to understand this mutation's impact. This study aims to create and characterize a reliable human in vitro model to mimic the effects of the TM6SF2-E167K mutation for future studies. APPROACH AND

resultsWe used gene editing on human-induced pluripotent stem cells from a healthy individual to create cells with the TM6SF2-E167K mutation. After hepatocyte-directed differentiation, we observed decreased TM6SF2 protein expression, increased intracellular lipid droplets, and total cholesterol, in addition to reduced VLDL secretion. Transcriptomics revealed the upregulation of genes involved in lipid, fatty acid, and cholesterol transport, flux, and oxidation. Global lipidomics showed increased lipid classes associated with endoplasmic reticulum (ER) stress, mitochondrial dysfunction, apoptosis, and lipid metabolism. In addition, the TM6SF2-E167K mutation conferred a proinflammatory phenotype with signs of mitochondria and ER stress. Importantly, by facilitating protein folding within the ER of hepatocytes carrying TM6SF2-E167K mutation, VLDL secretion and ER stress markers improved.

conclusionsOur findings indicate that induced hepatocytes generated from human-induced pluripotent stem cells carrying the TM6SF2-E167K recapitulate the effects observed in human hepatocytes from individuals with the TM6SF2 mutation. This study characterizes an in vitro model that can be used as a platform to identify potential clinical targets and highlights the therapeutic potential of targeting protein misfolding to alleviate ER stress and mitigate the detrimental effects of the TM6SF2-E167K mutation on hepatic lipid metabolism.

Indexed as

HepatocytesInduced Pluripotent Stem CellsLipid MetabolismMembrane ProteinsCell DifferentiationEndoplasmic Reticulum StressGene EditingHumansLiverMembrane ProteinsTM6SF2 protein, humanhuman hepatocytesiPSClipid metabolismliver disease modelTM6SF2 E167K

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.