Evidence map›Paper›PMID 40833400›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2025

A β-cap on the FliPQR protein-export channel acts as the cap for initial flagellar rod assembly.

Miki Kinoshita, Tomoko Miyata, Fumiaki Makino, Katsumi Imada, Keiichi Namba, Tohru Minamino

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. CRISPRi Screening Identifies EssentialInternational journal of molecular sciences · 2026
    Article
  3. Article
  4. A β-cap on the FliPQR protein-export channel acts as the cap for initial flagellar rod assembly.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Miki KinoshitaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan.
Tomoko MiyataGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan.
Fumiaki MakinoGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan.ORCID 0000-0001-9512-7087
Katsumi ImadaDepartment of Macromolecular Science, Graduate School of Science, Osaka University, Toyonaka, Osaka 560-0043, Japan.ORCID 0000-0003-1342-8885
Keiichi NambaGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan.ORCID 0000-0003-2911-5875
Tohru MinaminoGraduate School of Frontier Biosciences, Osaka University, Suita, Osaka 565-0871, Japan.ORCID 0000-0002-8175-1951

Funding

Japan Agency for Medical Research and Development (AMED) JP17pc0101020Japan Agency for Medical Research and Development (AMED) JP19am0101117Japan Agency for Medical Research and Development (AMED) JP21am0101117MEXT | Japan Society for the Promotion of Science (JSPS) 19H03182MEXT | Japan Society for the Promotion of Science (JSPS) JP20K15749MEXT | Japan Society for the Promotion of Science (JSPS) JP22H02573MEXT | Japan Society for the Promotion of Science (JSPS) JP22K06162Ministry of Education, Culture, Sports, Science and Technology (MEXT) JP20H05532Ministry of Education, Culture, Sports, Science and Technology (MEXT) JP22H04844
6 · The paper itself

Abstract

The FliPQR complex constitutes a channel for export of the flagellar proteins involved in axial structure assembly. It also serves as a template for the assembly of the rod structure, which consists of FliE, FlgB, FlgC, FlgF, and FlgG. FliP, FliQ, and FliR assemble into a right-handed helical structure within the central pore of the flagellar basal body MS-ring, and the complex has two gates on the cytoplasmic and periplasmic sides. The periplasmic gate, formed by the N-terminal α-helices of FliP and FliR, remains closed until six FliE subunits assemble onto FliP and FliR to form the first layer of the rod, but it has remained unclear how each FliE subunit opens the gate and assembles in the absence of the rod cap required for efficient assembly of other rod proteins. Here, we present a cryoelectron microscopy structure of the FliPQR complex in closed form at 3.0 Å resolution. A β-cap, formed by the N-terminal β-strands of FliP and FliR, is located at the top of the FliPQR complex and tightly seals the closed gate. The β-cap has a narrow pore that efficiently and accurately leads the first FliE subunit to its assembly site. Interactions of FliE with FliP and FliR induce a conformational change in FliP and FliR, with their N-terminal α-helices move up and outward to open the gate. Consequently, each of the N-terminal β-strands of FliP and FliR detaches from the β-cap one after another, thereby creating a docking site for the next FliE subunit to efficiently assemble.

Indexed as

Bacterial ProteinsFlagellaCryoelectron MicroscopyModels, MolecularBacterial Proteinscryoelectron microscopyflagellar rodflagellumtype III secretion system

Identifiers

PMID40833400
PMCPMC12403130

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.